View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16191_low_1 (Length: 526)

Name: NF16191_low_1
Description: NF16191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16191_low_1
NF16191_low_1
[»] chr5 (4 HSPs)
chr5 (205-526)||(2772242-2772562)
chr5 (23-204)||(15274613-15274794)
chr5 (132-202)||(8110818-8110888)
chr5 (137-206)||(11892373-11892442)
[»] chr7 (3 HSPs)
chr7 (23-204)||(24806597-24806778)
chr7 (23-204)||(22710109-22710290)
chr7 (23-204)||(26280548-26280729)
[»] chr3 (4 HSPs)
chr3 (23-204)||(18150225-18150406)
chr3 (23-204)||(13792133-13792314)
chr3 (23-204)||(12412496-12412677)
chr3 (150-206)||(27963378-27963434)
[»] chr2 (3 HSPs)
chr2 (23-204)||(24221769-24221950)
chr2 (232-391)||(33493247-33493405)
chr2 (150-204)||(18360575-18360629)
[»] chr6 (3 HSPs)
chr6 (23-205)||(1709959-1710142)
chr6 (97-205)||(16847284-16847393)
chr6 (150-204)||(9823522-9823576)
[»] chr8 (5 HSPs)
chr8 (23-206)||(19476004-19476187)
chr8 (23-206)||(19546929-19547112)
chr8 (23-206)||(19585577-19585760)
chr8 (23-200)||(16247348-16247512)
chr8 (150-204)||(6826568-6826622)
[»] chr4 (2 HSPs)
chr4 (23-204)||(1773397-1773578)
chr4 (149-204)||(41418030-41418085)
[»] chr1 (1 HSPs)
chr1 (70-204)||(27854362-27854496)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 205 - 526
Target Start/End: Original strand, 2772242 - 2772562
Alignment:
Q  205 caatttagccattctctctgtgatgtcgaagaagaaacagagaaatgccaagaaaaaagtgagaaagattaacgtctccgggaaaaccaaagcactccct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  2772242 caatttagccattctctctgtgatgtcgaagaagaaacagagaaatgccaagaaaaaagtgagaaagattaacgtcttcgggaaa-ccaaagcactccct 2772340  T
Q  305 tgacgtcaacaggagcaatgtcgctaaaaaagagtggcggtctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccgtacgtaacgggaag 404  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  2772341 tgacgtcaacaggagcaatgtcgttaaaaaagagtggcggtctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccgtacgtaacagaaag 2772440  T
Q  405 ggaaaagtcttacacaacgagtttcagtccaaggatctccccagcacaagaattcaacctgatcctcgttggttcggttagtccaatttgacatcataaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  2772441 ggaaaagtcttacacaacgagtttcagtccaaggatctccccagcacaagaattcaatctgatcctcgttggttcggttagtccaatttgacctcataaa 2772540  T
Q  505 aattcaatgtgtccaagtacat 526  Q
    ||||||||||||||||||||||    
T  2772541 aattcaatgtgtccaagtacat 2772562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 15274794 - 15274613
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15274794 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 15274695  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15274694 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 15274613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 8110888 - 8110818
Alignment:
Q  132 ccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtag 202  Q
    |||||||| || ||||||| |||| | ||||||||||||||||||||||||| | ||||||||||||||||    
T  8110888 ccacatatgcccacggaaattagcatgtagtgacggtttttgcccgtcactacaagtcaagtttcttgtag 8110818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 11892442 - 11892373
Alignment:
Q  137 tatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 206  Q
    |||||| ||| ||| ||||||||||||||||||||| ||| | | || || |||||||||||||||||||    
T  11892442 tatacccacgaaaattagcctttagtgacggttttttccctttattaaagatcaagtttcttgtagtgca 11892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 24806597 - 24806778
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24806597 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 24806696  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24806697 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 24806778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 22710290 - 22710109
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22710290 cgtaggtaaaggtactgtccataggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 22710191  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22710190 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 22710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 26280729 - 26280548
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    |||||||||| |||||||  || ||||  || |||||  ||| |||||| |||| ||||||| | |  ||| | |||||||||||||||| | | |||||    
T  26280729 cgtaggtaaaagtactgtatgtgggtattacgtgcacagacacacaaaattccgatgcaactcgttgggtaaactgcacggccaatatggacataggtga 26280630  T
Q  123 aagctttgg-ccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    | | |||   ||| |||| || ||||||| |||||| |||||| ||||||| |||||||||| | ||||||||||||||||||    
T  26280629 atgtttttcaccatatatgcccacggaaactagcctctagtgatggttttt-cccgtcactaaaagtcaagtttcttgtagtg 26280548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 18150406 - 18150225
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150406 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 18150307  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150306 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 18150225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 13792314 - 13792133
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  13792314 cgtaggtaaaggtactgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtggatga 13792215  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13792214 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcacttgaggtcaagtttcttgtagtg 13792133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 12412677 - 12412496
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  12412677 cgtaggtaaaggtactgtaagtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggctgtgggtga 12412578  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12412577 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 12412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 27963434 - 27963378
Alignment:
Q  150 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 206  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  27963434 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 27963378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 24221950 - 24221769
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24221950 cgtaggtaaaggtactggccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 24221851  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24221850 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 24221769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 232 - 391
Target Start/End: Complemental strand, 33493405 - 33493247
Alignment:
Q  232 gaagaagaaacagagaaatgccaagaaaaaagtgagaaagattaacgtctccgggaaaaccaaagcactcccttgacgtcaacaggagcaatgtcgctaa 331  Q
    |||||||||||  |||||| | ||||| || ||||||||| |||| ||||| || |||||| |||||||| || ||||||||| |||||||||||||||     
T  33493405 gaagaagaaactaagaaattcgaagaagaatgtgagaaaggttaatgtctctgg-aaaacctaagcactctctcgacgtcaaccggagcaatgtcgctac 33493307  T
Q  332 aaaagagtggcggtctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccgt 391  Q
    |||| |||  || |||||||| ||  |||||||||| |||||||||| || |||||||||    
T  33493306 aaaaaagtcacgttctgctgcaactgttcgccgtctaaaaatgtacaaaagcaaacccgt 33493247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 18360629 - 18360575
Alignment:
Q  150 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  18360629 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 18360575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 1709959 - 1710142
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaa-atccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtg 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1709959 cgtagataaaggtactgtccgtaggtaaaacatgcacttacagaaaaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtg 1710058  T
Q  122 aaagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgc 205  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1710059 aaagttttggccatatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgc 1710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 16847393 - 16847284
Alignment:
Q  97 tgcacggccaatatggccgtgggtgaaagctttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 195  Q
    |||||||||||| ||||||||||| || | ||| || || | || |||||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  16847393 tgcacggccaatgtggccgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 16847294  T
Q  196 cttgtagtgc 205  Q
    ||||||||||    
T  16847293 cttgtagtgc 16847284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 9823522 - 9823576
Alignment:
Q  150 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    |||||||| ||||||||||||||  | ||||||| ||||||| ||||||||||||    
T  9823522 aatagcctatagtgacggtttttatctgtcactacaggtcaaatttcttgtagtg 9823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 19476187 - 19476004
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  19476187 cgtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtga 19476088  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 206  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19476087 aagttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19476004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 19547112 - 19546929
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  19547112 cgtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtga 19547013  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 206  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19547012 aagttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19546929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 19585577 - 19585760
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  19585577 cgtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtga 19585676  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 206  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19585677 aagttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19585760  T

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Target: chr8; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 16247512 - 16247348
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16247512 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 16247413  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgt 200  Q
    ||| |||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16247412 aagttttggccacat-------------atagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgt 16247348  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 6826622 - 6826568
Alignment:
Q  150 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  6826622 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 6826568  T

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Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 1773578 - 1773397
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 122  Q
    ||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1773578 cgtagataaaggtactgttcgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtga 1773479  T
Q  123 aagctttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1773478 aagttttggccacatatacctatggaaaatagcctttagtgatggtttttgcccgtcactagaggtcaagtttcttgtagtg 1773397  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 41418030 - 41418085
Alignment:
Q  149 aaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41418030 aaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 41418085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 27854362 - 27854496
Alignment:
Q  70 aaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaaagctttggccacatatacctacggaaaatagcctttagtgacggtt 169  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||| ||||||| ||| ||| |||||| ||||||| |||    
T  27854362 aaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtcaaagtttttgccatatatacccacgaaaattagcctgtagtgactgtt 27854461  T
Q  170 tttgcccgtcactagaggtcaagtttcttgtagtg 204  Q
    ||| ||| |||||| ||||||||||||||||||||    
T  27854462 tttacccatcactaaaggtcaagtttcttgtagtg 27854496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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