View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16191_low_2 (Length: 395)
Name: NF16191_low_2
Description: NF16191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16191_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 39289526 - 39289146
Alignment:
| Q |
1 |
gagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgagcgaagagagtgtaatgagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39289526 |
gagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcaagcgaagagagtgtaatgagtga |
39289427 |
T |
|
| Q |
101 |
gaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagccatgctatcgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289426 |
gaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagccatgctatcgaa |
39289327 |
T |
|
| Q |
201 |
gaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacacaaggcttccctatagttttga |
300 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289326 |
gaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaacacaaggcttccctatagttttga |
39289227 |
T |
|
| Q |
301 |
caacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289226 |
caacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtg |
39289146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 39296406 - 39296029
Alignment:
| Q |
1 |
gagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctgcgagcgaagagagtgtaatgagtga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |||||||| |||||||| ||| || |
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| T |
39296406 |
gagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtgagtgtaaggagcga |
39296307 |
T |
|
| Q |
101 |
gaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagagaataaactagccatgctatcgaa |
200 |
Q |
| |
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||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| || |||||||||| ||||||||||| |||||||||||||| ||| |
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| T |
39296306 |
gagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttgtgatcgtgagaacgagagaatatactagccatgctattgaa |
39296210 |
T |
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| Q |
201 |
gaaacgccgcagccactatgaattcctccaagactctgaagaaatgaagttattgctgttttgattctaagagaaacacaaggcttccctatagttttga |
300 |
Q |
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||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39296209 |
gaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaacacaaggtttccctatagttttga |
39296110 |
T |
|
| Q |
301 |
caacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaaagtg |
381 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39296109 |
caacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatggagaaaagtg |
39296029 |
T |
|
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