View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16192_high_8 (Length: 235)
Name: NF16192_high_8
Description: NF16192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16192_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 31273488 - 31273694
Alignment:
| Q |
14 |
agaatatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcattcactatttaccaaatcttcagctactacat |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31273488 |
agaaaatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcattcactatttaccaaatcttcagctactacat |
31273587 |
T |
|
| Q |
114 |
tcactgtcattttggtctatata---gatattattttagcaggaaattcattatctgagtttaacaacatcaaatccatcttgcatgcttctttcaaaat |
210 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||||| |
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| T |
31273588 |
tcaccatcattttggtctatgtagatgatattattttagcaggaaattcat--tctgagtttaacaacatcaaatccgtcctgcgtgcttctttcaaaat |
31273685 |
T |
|
| Q |
211 |
taaagattt |
219 |
Q |
| |
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||||||||| |
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|
| T |
31273686 |
taaagattt |
31273694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 26214959 - 26215167
Alignment:
| Q |
14 |
agaatatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcattcactatttaccaaatcttcagctactacat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||| |
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| T |
26214959 |
agaaaatggtatgaaaggctcacctctttgttactggctcaaggttacaagcatgctaactcagatcattcactctttaccaaatcatcagctactgcat |
26215058 |
T |
|
| Q |
114 |
tcactgtcattttggtctatata---gatattattttagcaggaaattcattatctgagtttaacaacatcaaatccatcttgcatgcttctttcaaaat |
210 |
Q |
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||||| || ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
26215059 |
tcactatccttttggtttatgtagatgatattattttagcaggcaattcattatctgagtttaacaacatcaaattcatcctgcatacttctttcaaaat |
26215158 |
T |
|
| Q |
211 |
taaagattt |
219 |
Q |
| |
|
||||||||| |
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|
| T |
26215159 |
taaagattt |
26215167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 23374232 - 23374024
Alignment:
| Q |
14 |
agaatatggtatgaaaggctcacctctttgttattggctcaaggatacaagcatgctaactcatatcattcactatttaccaaatcttcagctactacat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||| |||||||| ||||||||||| ||||| | ||| |
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| T |
23374232 |
agaaaatggtatgaaaggctcacctctttattgctggctcaaggttacaagcatgctaacccataccattcactttttaccaaatccaaagctattgcat |
23374133 |
T |
|
| Q |
114 |
tcactgtcattttggtctatatagat---attattttagcaggaaattcattatctgagtttaacaacatcaaatccatcttgcatgcttctttcaaaat |
210 |
Q |
| |
|
||| | || ||||||| ||| ||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
23374132 |
tcaatttctttttggtatatgtagatgatattattcaagcatgaaattcattatctgagttcaacaacatcaaatccatcctgcatgcttctttcaaaat |
23374033 |
T |
|
| Q |
211 |
taaagattt |
219 |
Q |
| |
|
|| ||||| |
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|
| T |
23374032 |
aaaggattt |
23374024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 44230591 - 44230656
Alignment:
| Q |
155 |
aattcattatctgagtttaacaacatcaaatccatcttgcatgcttctttcaaaattaaagatttg |
220 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||| |||||||||| || ||||||||| |
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| T |
44230591 |
aattcattatctgagtttcaacacatcaaatccattctgcattcttctttcaagatcaaagatttg |
44230656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 15450297 - 15450337
Alignment:
| Q |
179 |
atcaaatccatcttgcatgcttctttcaaaattaaagattt |
219 |
Q |
| |
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|||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
15450297 |
atcaaatccatcctgcatgcttccttcaagattaaagattt |
15450337 |
T |
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