View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16192_low_1 (Length: 492)
Name: NF16192_low_1
Description: NF16192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16192_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 167 - 362
Target Start/End: Original strand, 10547157 - 10547351
Alignment:
| Q |
167 |
attggatggaatgagtttgtagaaaactattctataataagttaactggaagctgacctactgatgaaatgtttgaagatagtcatagtctccacaattt |
266 |
Q |
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| T |
10547157 |
attggatggaatgagtttgtagaaaactattctataataagttaagtggaaggtgacctactgatgaaatgtttgaagatagtcatagtctccacaattt |
10547256 |
T |
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| Q |
267 |
cgttagaatttcaattttgaatgacattttagcagtgccagtggtgttatgcattctaatgtagagaaatgtttaatatcagtttttagtattgca |
362 |
Q |
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| T |
10547257 |
cgttagaatttcaattttgaatgacatttt-gcagtgccagtggtgttatgcattctaatgtagagaaatgtttaatatcaatttttagtattgca |
10547351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 10547054 - 10547133
Alignment:
| Q |
91 |
ttttgaaagaataatgtcaaatactatcactctaaaacattatgaaaatttatactagtaggtcaaaagggaatagattg |
170 |
Q |
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| T |
10547054 |
ttttgaaagaataatgtcaaatactatcactctaaaacattatgaaaatttatactggtaggtcaaaagggaatagattg |
10547133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 399 - 474
Target Start/End: Original strand, 10547356 - 10547431
Alignment:
| Q |
399 |
atgagtatgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccggggctcaagctgaattac |
474 |
Q |
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| T |
10547356 |
atgagtatgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccggggctcaagctgaattac |
10547431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 452
Target Start/End: Original strand, 10551516 - 10551643
Alignment:
| Q |
322 |
ctaatgtagagaaatgtttaatatcagtttttagtattgcacttggatgttcagtggaatcaccaaaggaaaggatcatgagtatgattgaagtcataag |
421 |
Q |
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| T |
10551516 |
ctaatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaag---aatgaatatggttgatgtaataag |
10551612 |
T |
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| Q |
422 |
agagcttaatataatcaaaagtttctttcct |
452 |
Q |
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| T |
10551613 |
ggagctcaatatcataaaaagtttctttcct |
10551643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10547003 - 10547045
Alignment:
| Q |
1 |
cacccctcttataacaagtagttagtattattgaatgaatagt |
43 |
Q |
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| T |
10547003 |
cacccctcttataacaagtagttagtattattgaatgaatagt |
10547045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 305 - 474
Target Start/End: Complemental strand, 31466669 - 31466503
Alignment:
| Q |
305 |
cagtggtgttatgcattctaatgtagagaaatgtttaatatcagtttttagtattgcacttggatgttcagtggaatcaccaaaggaaaggatcatgagt |
404 |
Q |
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| T |
31466669 |
cagtggttttatgcattctaatgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaagg---atgagt |
31466573 |
T |
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| Q |
405 |
atgattgaagtcataagagagcttaatataatcaaaagtttctttcctcccggggctcaagctgaattac |
474 |
Q |
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||| |||||||||| ||||||||||||||||| ||||||||||||||| | |||| |||||||||||||| |
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| T |
31466572 |
atggttgaagtcattagagagcttaatataattaaaagtttctttcctactggggatcaagctgaattac |
31466503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 31466796 - 31466734
Alignment:
| Q |
221 |
gacctactgatgaaatgtttgaagatagtcatagtctccacaatttcgttagaatttcaattt |
283 |
Q |
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| T |
31466796 |
gacctacagatgaaatgtttgaagatagttatagtctccataattttgttaaaatttcaattt |
31466734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 474
Target Start/End: Original strand, 30363919 - 30364077
Alignment:
| Q |
314 |
tatgcattctaatgtagagaaatgtttaatatcagtttttagtattgcacttggatgttcagtggaatcaccaaaggaaaggatcatgagtatgattgaa |
413 |
Q |
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| T |
30363919 |
tatgcattctaatgtcgagaaatgtctactttcacttttctgtattgcacttgcatgttcaacggaatcaccgaaagaaagaat---gagtatggttgaa |
30364015 |
T |
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| Q |
414 |
gtcataagagagcttaatataatcaaaagtttctttcctcccg-gggctcaagctgaattac |
474 |
Q |
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| T |
30364016 |
gtcataagagagcttaatataatcaaaagtttctttcctactgtggggtcaagctgaattac |
30364077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 30363757 - 30363846
Alignment:
| Q |
207 |
gttaactggaagctgacctactgatgaaatgtttgaagatagtcatagtctccacaatttcgttagaatttcaattttgaatgacatttt |
296 |
Q |
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| T |
30363757 |
gttaaccggaagaagacctacagataaaatgtttgaagatagtcacagtctccgcaattttgttaaaatttcaatttcaaatgacctttt |
30363846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 3598407 - 3598373
Alignment:
| Q |
89 |
tattttgaaagaataatgtcaaatactatcactct |
123 |
Q |
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| T |
3598407 |
tattttgaaagaataatgtcaaatactatcactct |
3598373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 14338498 - 14338466
Alignment:
| Q |
89 |
tattttgaaagaataatgtcaaatactatcact |
121 |
Q |
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| T |
14338498 |
tattttgaaagaataatgtcaaatactatcact |
14338466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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