View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16192_low_10 (Length: 235)
Name: NF16192_low_10
Description: NF16192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16192_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1247951 - 1248167
Alignment:
| Q |
1 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
100 |
Q |
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| T |
1247951 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
1248050 |
T |
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| Q |
101 |
gtttattgtttaattgaatgtattgtgaaaatgtactaattgttttgtgattttttgggtgtttatggtgattgattggtttttaagttgtaaaaattta |
200 |
Q |
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| T |
1248051 |
gtttattgtttaattgaatgtattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtgattgattggtttttaagttgtaaaaattta |
1248150 |
T |
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| Q |
201 |
agcttttgggttgttgt |
217 |
Q |
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| T |
1248151 |
agcttttgggttgttgt |
1248167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 1247895 - 1247950
Alignment:
| Q |
161 |
gtttatggtgattgattggtttttaagttgtaaaaatttaagcttttgggttgttg |
216 |
Q |
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| T |
1247895 |
gtttttggtggttgattggtttttaagttgtaaaaatttaagcttttgggttgttg |
1247950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 1248616 - 1248731
Alignment:
| Q |
91 |
tgtatgatctgtttattgtttaattgaatgtattgtgaaaatgtactaatt-gttttgtgattttttgggtgtttatggtgattgattggtttttaagtt |
189 |
Q |
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| T |
1248616 |
tgtatgatctgtttagtgcttaattgaatgtattgtgaaaatgtgctaattcattttgtgattttt----------agatgatttattggttataaactt |
1248705 |
T |
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| Q |
190 |
gtaaaaatttaagcttttgggttgtt |
215 |
Q |
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| T |
1248706 |
gtaaaaatttaagcttttgggttgtt |
1248731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 1248487 - 1248542
Alignment:
| Q |
161 |
gtttatggtgattgattggtttt-taagttgtaaaaatttaagcttttgggttgtt |
215 |
Q |
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| T |
1248487 |
gtttatcgtgattgattcgttctctaagttgtaaaaatttaagcttttgggttgtt |
1248542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42014723 - 42014939
Alignment:
| Q |
1 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
100 |
Q |
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| T |
42014723 |
gttatgtggggtgatgaatcatgaatgaatgaatggaagaatgataggtttgaagttggtgaggttttaacttattaattttaaggtgattgtatgatct |
42014822 |
T |
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| Q |
101 |
gtttattgtttaattgaatgtattgtgaaaatgtactaattgttttgtgattttttgggtgtttatggtgattgattggtttttaagttgtaaaaattta |
200 |
Q |
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| T |
42014823 |
gtttagtgtttaattgaatatattgtgaaaatgtgctaattgttttgtgattttttgggtgtttatggtgattgattggtttttaagttgtaaaaattta |
42014922 |
T |
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| Q |
201 |
agcttttgggttgttgt |
217 |
Q |
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| T |
42014923 |
agcttttgggttgttgt |
42014939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 42014667 - 42014722
Alignment:
| Q |
161 |
gtttatggtgattgattggtttttaagttgtaaaaatttaagcttttgggttgttg |
216 |
Q |
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| T |
42014667 |
gtttttggtggttgattggttttttagttgtaaaaatttaagcttttgggttgttg |
42014722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 42015386 - 42015513
Alignment:
| Q |
79 |
ttttaaggtgattgtatgatctgtttattgtttaattgaatgtattgtgaaaatgtactaatt-gttttgtgattttttgggtgtttatggtgattgatt |
177 |
Q |
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| T |
42015386 |
ttttaagttaattgtatgatctgtttagtgcttaattgaatgtgttgtgaaaatgtgctaattcattttgtgattttt----------agatgatttatt |
42015475 |
T |
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| Q |
178 |
ggtttttaagttgtaaaaatttaagcttttgggttgtt |
215 |
Q |
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| T |
42015476 |
ggttataaacttgtaaaaatttaagcttttgggttgtt |
42015513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 42015269 - 42015324
Alignment:
| Q |
161 |
gtttatggtgattgattggtt-tttaagttgtaaaaatttaagcttttgggttgtt |
215 |
Q |
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|||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
42015269 |
gtttatcgtgattgattcgttctttaagttgtaaaaatttaagcttttgggttgtt |
42015324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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