View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16192_low_2 (Length: 487)

Name: NF16192_low_2
Description: NF16192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16192_low_2
NF16192_low_2
[»] chr2 (3 HSPs)
chr2 (1-354)||(44622184-44622543)
chr2 (405-473)||(44618947-44619015)
chr2 (356-408)||(44619849-44619901)
[»] chr4 (2 HSPs)
chr4 (363-464)||(23634822-23634923)
chr4 (27-96)||(34977769-34977837)
[»] chr7 (2 HSPs)
chr7 (372-415)||(24534932-24534975)
chr7 (363-399)||(43449854-43449890)
[»] chr1 (1 HSPs)
chr1 (363-464)||(39435702-39435803)
[»] chr6 (1 HSPs)
chr6 (363-399)||(17109788-17109824)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 44622543 - 44622184
Alignment:
Q  1 ttatttttcgtgagacatggcaattataagagtctggtgcctgaaggaatttaatttcgggttcattaaggatttttggattgatttaaaagatgatata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44622543 ttatttttcgtgagacatggcaattataagagtctggtgcctgaaggaatttaatttctggttcattaaggatttttggattgatttaaaagatgatata 44622444  T
Q  101 ttatgcattttttattagaatttcattggaatgaagagctaacgaaaggaattaatagtattttcatcgctttcaacggttagctaattttcgccctata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44622443 ttatgcattttttattagaatttcattggaatgaagagctaacgaaaggaattaatagtatttttatcgctttcaacggttagctaattttcgccctata 44622344  T
Q  201 tctttggtgggctgcttgtataaggtattgtttaaggtgttaagaaaccgattgagaagtatgatgggcaatataatctcataatcttagtcaaccttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44622343 tctttggtgggctgcttgtataaggtattgtttaaggtgttaagaaaccgattgagaagtatgatgggcaatataatctcataatcttagtcaaccttta 44622244  T
Q  301 tttaagagagacaaattcttgatgg------aatagaaaatgagttggtggatgatgctc 354  Q
    || ||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  44622243 ttcaagagagacaaattcttgatggaattctaatagaaaatgagttggtggatgatgctc 44622184  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 44619015 - 44618947
Alignment:
Q  405 tttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaactctttggtga 473  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44619015 tttgacttagtcgatcagaggtacctacatgttgtaatgattaaaatgaactttccaactctttggtga 44618947  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 44619901 - 44619849
Alignment:
Q  356 acgatacaaaaaagagttattattatttaaagttgattttgaaatggattttg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44619901 acgatacaaaaaagagttattattatttaaagttgattttgaaatggattttg 44619849  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 23634822 - 23634923
Alignment:
Q  363 aaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaa 462  Q
    ||||||||| | ||||||||||||||||| ||||| | || |||||| |  |||||| || | || ||  |||||||||||| ||||||||| |||||||    
T  23634822 aaaaaagagatgttattatttaaagttgaatttgagaaggcttttgattcggtcgattggtgatatcttgatgttgtaatgactaaaatgaattttccaa 23634921  T
Q  463 ct 464  Q
    ||    
T  23634922 ct 23634923  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 34977837 - 34977769
Alignment:
Q  27 taagagtctggtgcctgaaggaatttaatttcgggttcattaaggatttttggattgatttaaaagatga 96  Q
    ||||||||||| |||||| |||||| ||||| || ||||| |||||||||||| | |||||||| |||||    
T  34977837 taagagtctggggcctgacggaatt-aattttggtttcatcaaggatttttggctcgatttaaaggatga 34977769  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 24534975 - 24534932
Alignment:
Q  372 ttattattatttaaagttgattttgaaatggattttgacttagt 415  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||    
T  24534975 ttattattatttaaagttgactttgaaaaggattttgagttagt 24534932  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 43449854 - 43449890
Alignment:
Q  363 aaaaaagagttattattatttaaagttgattttgaaa 399  Q
    |||||| |||||||||| |||||||||||||||||||    
T  43449854 aaaaaatagttattattgtttaaagttgattttgaaa 43449890  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 464
Target Start/End: Complemental strand, 39435803 - 39435702
Alignment:
Q  363 aaaaaagagttattattatttaaagttgattttgaaatggattttgacttagtcgatcggaggtacctacatgttgtaatgattaaaatgaactttccaa 462  Q
    ||||||||||| ||||||||||||||| ||||||||| ||  | ||| | | | |||  |||||| ||  |||| |||||| |||||||||| |||||||    
T  39435803 aaaaaagagttgttattatttaaagttaattttgaaaaggcatatgattcaatagattagaggtatcttgatgtcgtaatggttaaaatgaaatttccaa 39435704  T
Q  463 ct 464  Q
    ||    
T  39435703 ct 39435702  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 17109788 - 17109824
Alignment:
Q  363 aaaaaagagttattattatttaaagttgattttgaaa 399  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17109788 aaaaaagaattattattatttaatgttgattttgaaa 17109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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