View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16192_low_4 (Length: 412)
Name: NF16192_low_4
Description: NF16192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16192_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 8457754 - 8458140
Alignment:
| Q |
17 |
acttatttcttacggcttgaacacggcgttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaatcgtgagataatgttgctaaaccaaa |
116 |
Q |
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| T |
8457754 |
acttatttcttacggcttgaacacggcgttagtagataaatttttcatttgttttgctgtcatcaaaacatcaatcgtgagataatgtggctaaaccaaa |
8457853 |
T |
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| Q |
117 |
ttgattcttacatattcaaagacttgaaaattagcatgcatatcaatgttcnnnnnnnnacgcaagaattgaaatcaagaactttagtgtaatttatttt |
216 |
Q |
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| T |
8457854 |
ttgattcttacatattcaaggacttgaaaattaacatgcatatcaatgttcttttttttacgcaagaattgaaatcaagaactttagtgtaatttatttt |
8457953 |
T |
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| Q |
217 |
cttactactttatccacactttcaaaacactttcggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatct |
316 |
Q |
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| T |
8457954 |
cttactactttatccacactttcaaaacacttttggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatct |
8458053 |
T |
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| Q |
317 |
acgtgtagtttctttcaacaagtagggtccaaaagtgctaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
403 |
Q |
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| T |
8458054 |
acgtgtagtttctttcaacaagtagggtccaaaagtggtaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
8458140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 32652169 - 32652123
Alignment:
| Q |
44 |
gttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaa |
90 |
Q |
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| T |
32652169 |
gttagcagacaaattatttatttgttttgttatcatcaaaacatcaa |
32652123 |
T |
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