View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16193_high_2 (Length: 503)
Name: NF16193_high_2
Description: NF16193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16193_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 31097410 - 31097897
Alignment:
| Q |
1 |
gttccacacaatcaactgatcatgattagtcttgtgtaggtaattgttgatcggttgaattcttgctacctttgatcagtatatagaactctaaagggat |
100 |
Q |
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| T |
31097410 |
gttccacacaatcaactgatcatgattagtcttgtgtaggtaattgttgatcggttgaattcttgctacctttgatcagtatatagaactctaaagggat |
31097509 |
T |
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| Q |
101 |
aaagattgagaataagtnnnnnnnnctttatcaatttaaaaatatcaaactgattgttaattaaatcttgatataaaaactgacttgataaaaatatcat |
200 |
Q |
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| T |
31097510 |
aaagattgagaataagtaaaaaaaactttatcaatttaaaaatatcaaactgattgttaattaaatcttgatataaaaactgacttgataaaaatatcat |
31097609 |
T |
|
| Q |
201 |
tactattagaccagccacctcacattctcagttctcaaatcaagccttgatccacttgccttgctgtctccatgatgtggatttactttgtaaaggcatc |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097610 |
tactattaaaccagccacctcacattctcagttctcaaatcaagccttgatccacttgccttgctgtctccatgatgtggatttactttgtaaaggcatc |
31097709 |
T |
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| Q |
301 |
aactggagaaagcttaacaacgtaacattctcattatcgctgctatagccaccactacctctaccccaaccaatccgtctcgcattctcaatgcttccat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31097710 |
aactggagaaagcttaacaacgtaacattctcattatcgctgctatagccaccactacctctaccccgaccaatccgtctcgcattctcaatgcttccat |
31097809 |
T |
|
| Q |
401 |
tacctttaaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttttctctgcgatccaaataatgggccatatt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097810 |
tacctttaaactatcttgtagcaattactgtgcttggaaacaccaatcacctacttttttctctgcgatccaaataatgggccatatt |
31097897 |
T |
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