View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16193_high_20 (Length: 310)
Name: NF16193_high_20
Description: NF16193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16193_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 28783492 - 28783194
Alignment:
| Q |
1 |
ccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783492 |
ccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctctt |
28783393 |
T |
|
| Q |
101 |
cctcctcctgttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783392 |
cctcctcctgttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagc |
28783293 |
T |
|
| Q |
201 |
cacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccacaggttc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28783292 |
cacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttc |
28783194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 110 - 292
Target Start/End: Complemental strand, 28783278 - 28783099
Alignment:
| Q |
110 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||| |||| |
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| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
28783179 |
T |
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| Q |
210 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
292 |
Q |
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| T |
28783178 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
28783099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 28783557 - 28783448
Alignment:
| Q |
2 |
cctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttc |
101 |
Q |
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||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||||| |
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| T |
28783557 |
cctccacctacacctgtctacgagaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttc |
28783458 |
T |
|
| Q |
102 |
ctcctcctgt |
111 |
Q |
| |
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|||| ||||| |
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| T |
28783457 |
ctccacctgt |
28783448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28783591 - 28783487
Alignment:
| Q |
1 |
ccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctctt |
100 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||||||| ||||| || | |||||||| ||||| ||| |||||| || ||||||||||| |
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| T |
28783591 |
ccctcctcctacacctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgtgcctgtttaccataaacctctc |
28783492 |
T |
|
| Q |
101 |
cctcc |
105 |
Q |
| |
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||||| |
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| T |
28783491 |
cctcc |
28783487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 28783634 - 28783553
Alignment:
| Q |
24 |
agaaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
105 |
Q |
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|||||||| |||||||||||||||| | ||| | |||||| ||||||| ||||| ||||| ||| | |||||||||||||| |
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| T |
28783634 |
agaaaccttgtcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
28783553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 28783500 - 28783421
Alignment:
| Q |
26 |
aaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
105 |
Q |
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|||||||| ||||||||| ||||| ||| | |||||||| ||||||||| |||||| |||||||||||||| ||||| |
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| T |
28783500 |
aaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctcc |
28783421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 28783578 - 28783514
Alignment:
| Q |
47 |
cctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
111 |
Q |
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||||||||| | |||||||| ||||||||||| ||||| || | |||||||||||||| ||||| |
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| T |
28783578 |
cctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgt |
28783514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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