View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16193_high_21 (Length: 309)

Name: NF16193_high_21
Description: NF16193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16193_high_21
NF16193_high_21
[»] chr5 (11 HSPs)
chr5 (1-300)||(22750950-22751249)
chr5 (9-252)||(38144532-38144773)
chr5 (9-244)||(28370058-28370291)
chr5 (9-244)||(19512204-19512438)
chr5 (38-257)||(23528478-23528695)
chr5 (183-244)||(18407947-18408008)
chr5 (183-244)||(23111203-23111264)
chr5 (192-244)||(22438751-22438803)
chr5 (193-244)||(19236900-19236951)
chr5 (195-244)||(22461158-22461207)
chr5 (195-244)||(22467782-22467831)
[»] chr7 (24 HSPs)
chr7 (1-300)||(18873169-18873468)
chr7 (1-244)||(15167984-15168227)
chr7 (1-243)||(10895795-10896037)
chr7 (9-251)||(14422802-14423043)
chr7 (1-252)||(12709839-12710090)
chr7 (1-252)||(13122910-13123161)
chr7 (9-244)||(16009395-16009628)
chr7 (8-252)||(13743526-13743768)
chr7 (38-252)||(12590639-12590851)
chr7 (134-252)||(13007374-13007491)
chr7 (79-244)||(16677180-16677347)
chr7 (79-244)||(17651416-17651583)
chr7 (192-244)||(11382874-11382926)
chr7 (192-244)||(11389351-11389403)
chr7 (192-244)||(20311055-20311107)
chr7 (192-244)||(21230963-21231015)
chr7 (184-244)||(13679485-13679545)
chr7 (193-244)||(2971254-2971305)
chr7 (193-244)||(11311059-11311110)
chr7 (193-244)||(20906465-20906516)
chr7 (191-242)||(46625961-46626012)
chr7 (212-252)||(831629-831669)
chr7 (212-252)||(1196809-1196849)
chr7 (212-252)||(34958578-34958618)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-252)||(11846-12097)
scaffold0026 (9-244)||(111504-111737)
[»] chr3 (22 HSPs)
chr3 (1-244)||(14762761-14763004)
chr3 (1-244)||(38310803-38311046)
chr3 (15-244)||(20247792-20248021)
chr3 (9-244)||(9534146-9534379)
chr3 (8-244)||(24192771-24193008)
chr3 (9-244)||(23370509-23370743)
chr3 (12-244)||(55499105-55499337)
chr3 (134-244)||(24933832-24933941)
chr3 (166-252)||(41455093-41455178)
chr3 (108-252)||(16801463-16801606)
chr3 (186-244)||(18929239-18929297)
chr3 (183-244)||(17240516-17240577)
chr3 (193-244)||(13302244-13302295)
chr3 (193-244)||(13323791-13323842)
chr3 (193-244)||(12033448-12033499)
chr3 (193-244)||(13312900-13312951)
chr3 (193-244)||(17131732-17131783)
chr3 (193-244)||(51301589-51301640)
chr3 (134-244)||(10389447-10389557)
chr3 (134-244)||(10414536-10414646)
chr3 (134-244)||(10421206-10421316)
chr3 (191-244)||(16801027-16801080)
[»] scaffold1773 (1 HSPs)
scaffold1773 (1-252)||(988-1237)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-252)||(49989-50238)
[»] chr6 (24 HSPs)
chr6 (14-244)||(23057760-23057990)
chr6 (1-252)||(29614142-29614393)
chr6 (9-244)||(23839016-23839250)
chr6 (9-244)||(10986184-10986418)
chr6 (9-252)||(18800255-18800497)
chr6 (12-244)||(4477678-4477909)
chr6 (115-252)||(930091-930227)
chr6 (9-244)||(21565215-21565449)
chr6 (134-252)||(12168305-12168422)
chr6 (134-252)||(19287214-19287331)
chr6 (134-252)||(19785865-19785982)
chr6 (134-252)||(19878398-19878515)
chr6 (134-252)||(19884174-19884291)
chr6 (165-244)||(34639990-34640069)
chr6 (165-244)||(34646664-34646743)
chr6 (134-244)||(25469708-25469816)
chr6 (192-240)||(24512851-24512899)
chr6 (195-244)||(9187498-9187547)
chr6 (191-244)||(25348486-25348539)
chr6 (191-244)||(25598643-25598696)
chr6 (191-244)||(25397172-25397225)
chr6 (191-244)||(2286770-2286823)
chr6 (191-244)||(19471338-19471391)
chr6 (183-244)||(31252413-31252474)
[»] scaffold0029 (1 HSPs)
scaffold0029 (28-252)||(111717-111942)
[»] chr4 (12 HSPs)
chr4 (1-252)||(8045828-8046078)
chr4 (1-252)||(11847916-11848173)
chr4 (134-244)||(53483646-53483756)
chr4 (192-244)||(15408139-15408191)
chr4 (191-244)||(8834895-8834948)
chr4 (191-244)||(13888641-13888694)
chr4 (193-244)||(14486661-14486712)
chr4 (191-242)||(22724691-22724742)
chr4 (191-244)||(15245215-15245268)
chr4 (191-242)||(15308120-15308171)
chr4 (193-242)||(27906266-27906315)
chr4 (212-252)||(15747552-15747592)
[»] scaffold0924 (1 HSPs)
scaffold0924 (1-252)||(746-997)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-252)||(1893-2143)
scaffold0117 (1-252)||(8570-8820)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-244)||(14399-14635)
[»] chr8 (14 HSPs)
chr8 (9-244)||(44477441-44477674)
chr8 (9-244)||(44492599-44492832)
chr8 (1-244)||(8727736-8727979)
chr8 (1-252)||(23866423-23866674)
chr8 (9-156)||(27940946-27941091)
chr8 (134-244)||(17054533-17054642)
chr8 (191-302)||(18614271-18614382)
chr8 (183-244)||(23482056-23482117)
chr8 (191-244)||(39364919-39364972)
chr8 (193-244)||(29643389-29643440)
chr8 (192-244)||(14056567-14056619)
chr8 (192-244)||(25111976-25112028)
chr8 (193-244)||(24320674-24320725)
chr8 (191-244)||(21931696-21931749)
[»] chr2 (15 HSPs)
chr2 (9-244)||(19661457-19661690)
chr2 (9-244)||(6483536-6483769)
chr2 (9-244)||(6487003-6487236)
chr2 (79-252)||(26583715-26583886)
chr2 (9-244)||(23878826-23879059)
chr2 (9-244)||(23089058-23089292)
chr2 (9-244)||(23101466-23101700)
chr2 (134-244)||(5706027-5706137)
chr2 (183-244)||(23265133-23265194)
chr2 (183-244)||(23280201-23280262)
chr2 (186-244)||(21908353-21908411)
chr2 (191-244)||(24661576-24661629)
chr2 (193-244)||(10577-10628)
chr2 (193-244)||(25180933-25180984)
chr2 (144-244)||(26885133-26885233)
[»] chr1 (12 HSPs)
chr1 (9-244)||(20437027-20437261)
chr1 (134-252)||(41111977-41112094)
chr1 (183-302)||(32651563-32651682)
chr1 (183-244)||(18712790-18712851)
chr1 (192-244)||(19663520-19663572)
chr1 (191-244)||(10811786-10811839)
chr1 (191-244)||(20805320-20805373)
chr1 (192-244)||(11158093-11158145)
chr1 (193-244)||(20851136-20851187)
chr1 (193-244)||(20857763-20857814)
chr1 (193-244)||(21706276-21706327)
chr1 (193-244)||(21710818-21710869)
[»] scaffold0553 (1 HSPs)
scaffold0553 (9-244)||(10199-10433)
[»] scaffold0544 (1 HSPs)
scaffold0544 (9-244)||(1529-1763)
[»] scaffold0247 (1 HSPs)
scaffold0247 (9-252)||(11159-11401)
[»] scaffold0058 (1 HSPs)
scaffold0058 (8-252)||(109-350)
[»] scaffold0090 (1 HSPs)
scaffold0090 (8-252)||(17985-18229)
[»] scaffold0456 (4 HSPs)
scaffold0456 (165-300)||(904-1039)
scaffold0456 (165-300)||(8049-8184)
scaffold0456 (8-102)||(806-899)
scaffold0456 (8-102)||(7951-8044)
[»] scaffold0476 (1 HSPs)
scaffold0476 (9-244)||(3296-3531)
[»] scaffold0154 (1 HSPs)
scaffold0154 (108-252)||(30772-30917)
[»] scaffold0077 (1 HSPs)
scaffold0077 (9-244)||(3625-3859)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-88)||(3471-3558)
[»] scaffold0796 (2 HSPs)
scaffold0796 (134-252)||(1728-1845)
scaffold0796 (134-252)||(5751-5868)
[»] scaffold0004 (1 HSPs)
scaffold0004 (183-294)||(116887-116998)
[»] scaffold0129 (1 HSPs)
scaffold0129 (136-244)||(45278-45386)
[»] scaffold0222 (1 HSPs)
scaffold0222 (183-244)||(16811-16872)
[»] scaffold0461 (1 HSPs)
scaffold0461 (183-244)||(11-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (183-244)||(13623-13684)
[»] scaffold0020 (1 HSPs)
scaffold0020 (183-244)||(101931-101992)
[»] scaffold0310 (1 HSPs)
scaffold0310 (192-244)||(17643-17695)
[»] scaffold0107 (1 HSPs)
scaffold0107 (192-244)||(40535-40587)
[»] scaffold0019 (1 HSPs)
scaffold0019 (192-244)||(135473-135525)
[»] scaffold0235 (1 HSPs)
scaffold0235 (194-244)||(22596-22646)
[»] scaffold0124 (1 HSPs)
scaffold0124 (192-244)||(34279-34331)
[»] scaffold0138 (1 HSPs)
scaffold0138 (191-244)||(12296-12349)
[»] scaffold0317 (1 HSPs)
scaffold0317 (184-244)||(1378-1438)
[»] scaffold0139 (1 HSPs)
scaffold0139 (192-244)||(15000-15052)
[»] scaffold0096 (1 HSPs)
scaffold0096 (191-244)||(39510-39563)
[»] scaffold0815 (1 HSPs)
scaffold0815 (196-244)||(1453-1501)
[»] scaffold1318 (1 HSPs)
scaffold1318 (193-244)||(1916-1967)
[»] scaffold0348 (1 HSPs)
scaffold0348 (193-244)||(9336-9387)
[»] scaffold0127 (1 HSPs)
scaffold0127 (193-244)||(10239-10290)
[»] scaffold0023 (1 HSPs)
scaffold0023 (193-244)||(135438-135489)
[»] scaffold0001 (1 HSPs)
scaffold0001 (193-244)||(493032-493082)
[»] scaffold2054 (1 HSPs)
scaffold2054 (159-252)||(680-774)
[»] scaffold0609 (1 HSPs)
scaffold0609 (183-244)||(5861-5922)
[»] scaffold0335 (1 HSPs)
scaffold0335 (191-244)||(2631-2684)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 22750950 - 22751249
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750950 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 22751049  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  22751050 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttca 22751149  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgcacaacgaccagattctctgactatacttgttcatctc 300  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22751150 gaaattatagattatgattatcgagagaaagtctcacccttaccttagttttagaagaaacgcacaacgaccggattctctgactatacttgttcttctc 22751249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 38144773 - 38144532
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  38144773 ttcatcaattcatccaatcaatcgtaa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaatagaat 38144675  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  38144674 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattat 38144576  T
Q  209 agattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  38144575 agattatgattattgagagatagtctcacccttaccttagtttt 38144532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 28370291 - 28370058
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  28370291 ttcatcaattcatcccatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 28370193  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28370192 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 28370094  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  28370093 agattatgattattgagagatagtctcacccttacc 28370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 19512204 - 19512438
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  19512204 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaatagaat 19512302  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  19512303 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 19512401  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||||||||||||||    
T  19512402 tagattatgattattgagagatagtctcacccttacc 19512438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 23528478 - 23528695
Alignment:
Q  38 ttcaatcaatttatg-atcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttca 136  Q
    ||||||||||| ||| || |||||| |||||  ||||||| |||| |||| ||||||| ||| ||||  || |||||  ||| |||| || |  || |||    
T  23528478 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaactaacatcatccttactcatt--ccatca 23528575  T
Q  137 gaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 236  Q
    |||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23528576 gaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctca 23528674  T
Q  237 cccttaccatagttttagaag 257  Q
    |||||||| ||||||||||||    
T  23528675 cccttaccttagttttagaag 23528695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 18408008 - 18407947
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacc 18407947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 23111264 - 23111203
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23111203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 22438803 - 22438751
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttacc 22438751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 19236900 - 19236951
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 19236951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 22461158 - 22461207
Alignment:
Q  195 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttacc 22461207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 22467782 - 22467831
Alignment:
Q  195 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttacc 22467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 18873169 - 18873468
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18873169 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 18873268  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  18873269 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttca 18873368  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgcacaacgaccagattctctgactatacttgttcatctc 300  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  18873369 gaaattatagattatgattatcgagagaaagtctcacccttaccttagttttagaagaaacgcacaacggccggattctctgactatacttgttcttctc 18873468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15167984 - 15168227
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15167984 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 15168083  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  15168084 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttca 15168183  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  15168184 gaaattatagattatgattatcgagagatagtctcacccttacc 15168227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10896037 - 10895795
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10896037 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 10895938  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttc 199  Q
    ||| ||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||||| |||||||| |||| ||||||| ||||||||||||||||||    
T  10895937 aagagaattaacatgatcaataccc-attcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttc 10895839  T
Q  200 agaaattatagattatgattattgagagatagtctcacccttac 243  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  10895838 aaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 14422802 - 14423043
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||    
T  14422802 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaat 14422900  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  14422901 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 14422999  T
Q  208 tagattatgattattgagagatagtctcacccttaccatagttt 251  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  14423000 tagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12710090 - 12709839
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 99  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||| |||||| ||||||||||  ||||||||||||||||||    
T  12710090 tacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacattatatta 12709992  T
Q  100 caagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt 198  Q
    |||   ||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  12709991 caaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-ttt 12709893  T
Q  199 cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  12709892 caggaattataaattatgattattgagagatagtctcacccttaccttagtttt 12709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 13123161 - 13122910
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 99  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||| |||||| ||||||||||  ||||||||||||||||||    
T  13123161 tacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacattatatta 13123063  T
Q  100 caagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt 198  Q
    |||   ||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  13123062 caaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-ttt 13122964  T
Q  199 cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13122963 caggaattataaattatgattattgagagatagtctcacccttaccttagtttt 13122910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 16009395 - 16009628
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  16009395 ttcatcaattcatccaatcaatcataa-tttcaatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 16009493  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||| |||||||| ||||||||| | |||||||||||||||||||||||||||    
T  16009494 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaattttcagaaattat 16009592  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  16009593 agattatgattattgagagatagtctcacccttacc 16009628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 13743526 - 13743768
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaa 107  Q
    ||||||||||| |||||| ||  ||||| |||||| ||||||||||||||||||  |||| ||||||||| |||| ||||||||  ||| ||||||  ||    
T  13743526 attcatcaatttatccaaccaagcataa-tttcaaccaatttatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaa 13743624  T
Q  108 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaatta 207  Q
    |||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  13743625 ttaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaatta 13743723  T
Q  208 tagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    || |||||||||||||||||||||||||||||||||| |||||||    
T  13743724 taaattatgattattgagagatagtctcacccttaccttagtttt 13743768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 252
Target Start/End: Complemental strand, 12590851 - 12590639
Alignment:
Q  38 ttcaatcaatttatg-atcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttca 136  Q
    ||||||||||| ||| || |||||| |||||  ||||||| ||||||||| ||||||| ||| ||||  || |||||  ||| |||| || |  || |||    
T  12590851 ttcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcatt--ccatca 12590754  T
Q  137 gaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 236  Q
    |||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12590753 gaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctca 12590655  T
Q  237 cccttaccatagtttt 252  Q
    |||||||| |||||||    
T  12590654 cccttaccttagtttt 12590639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 13007374 - 13007491
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 13007472  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  13007473 tcacccttaccttagtttt 13007491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 16677180 - 16677347
Alignment:
Q  79 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaa 177  Q
    |||||||||||||| |  ||||||   | |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || ||||||||    
T  16677180 ttcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaa 16677279  T
Q  178 -ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16677280 actatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 16677347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 17651416 - 17651583
Alignment:
Q  79 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaa 177  Q
    |||||||||||||| |  ||||||   | |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || ||||||||    
T  17651416 ttcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaa 17651515  T
Q  178 -ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17651516 actatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 17651583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11382926 - 11382874
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacc 11382874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11389403 - 11389351
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacc 11389351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 20311107 - 20311055
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttacc 20311055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 21231015 - 21230963
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 21230963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 13679485 - 13679545
Alignment:
Q  184 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||| |||||||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacc 13679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 2971254 - 2971305
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttacc 2971305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 11311059 - 11311110
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||| ||||||| || | ||| ||||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacc 11311110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 20906516 - 20906465
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20906465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 46625961 - 46626012
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 242  Q
    ||||||||| ||||||||| ||||| || |||||||| ||||||||||||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcaccctta 46626012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 831669 - 831629
Alignment:
Q  212 ttatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagtttt 831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 1196849 - 1196809
Alignment:
Q  212 ttatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagtttt 1196809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 34958578 - 34958618
Alignment:
Q  212 ttatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagtttt 34958618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 12097 - 11846
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  12097 tacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattatattac 11998  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  11997 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaattttca 11898  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11897 gaaattatagattatgattattgagagatagtctcacccttaccttagtttt 11846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 111504 - 111737
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  111504 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 111602  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  111603 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 111701  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  111702 agattatgattattgagagatagtctcacccttacc 111737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14763004 - 14762761
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14763004 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 14762905  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  14762904 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttca 14762805  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  14762804 gaaattatagattatgattatcgagagatagtctcacccttacc 14762761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38311046 - 38310803
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38311046 tacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 38310947  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  38310946 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatattca 38310847  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  38310846 gaaattatagattatgattatcgagagatagtctcacccttacc 38310803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 20248021 - 20247792
Alignment:
Q  15 aattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacac 114  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||     
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacat 20247922  T
Q  115 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatta 214  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  20247921 gatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatta 20247822  T
Q  215 tgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||    
T  20247821 tgattattgagagatagtctcacccttacc 20247792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 9534146 - 9534379
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||  || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  9534146 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattacattacaacagaat 9534244  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9534245 taacatgatcaataccca-ttccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 9534343  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  9534344 agattatgattattgagagatagtctcacccttacc 9534379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 24192771 - 24193008
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgat-cacagcagcaacaaagattaagttttcattctgaacattatattacaaggga 106  Q
    ||||||||||| ||||||||| |||||  ||||||||| |||||||| ||||||| || || |||||||||||||||||||||||| | |||||||  ||    
T  24192771 attcatcaatttatccaatcaatcatat-tttcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcacattacaacaga 24192869  T
Q  107 attaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaat 205  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  24192870 attaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaat 24192969  T
Q  206 tatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24192970 tatagattatgattattgagagatagtctcacccttacc 24193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 23370743 - 23370509
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  23370743 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 23370645  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  23370644 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 23370546  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23370545 tagattatgattattgagagatagtcccacccttacc 23370509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 55499337 - 55499105
Alignment:
Q  12 atcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaa 111  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||| |   | |||||||| |||||||| |||||| | |||||||   ||||||    
T  55499337 atcaattcatccaatcaattatat-tttcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacatcacattacaacataattaa 55499239  T
Q  112 cacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatag 210  Q
    || |||||||||||| ||||| ||||||||||||| |||||||||||||||||||  |   |||   |||||| ||||||||||||| | ||||||| |     
T  55499238 catgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcagttaggtcaattttcccgaaattacat 55499140  T
Q  211 attat-gattattgagagatagtctcacccttacc 244  Q
    |||||  |||| |||||||||||||||||||||||    
T  55499139 attatctattaatgagagatagtctcacccttacc 55499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 24933941 - 24933832
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| |||||||||   |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 24933843  T
Q  234 tcacccttacc 244  Q
    |||||||||||    
T  24933842 tcacccttacc 24933832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 41455178 - 41455093
Alignment:
Q  166 tattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41455178 tattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 41455093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 16801606 - 16801463
Alignment:
Q  108 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaactaagcaattaggtcaattttcagaaatt 206  Q
    |||||| ||||||||| | |||| | ||| ||||||||| || |||||||| ||||||| || ||| ||| ||||||||| |||||||||||||||||||    
T  16801606 ttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaatt 16801508  T
Q  207 atagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||| || ||||||||||||||||||||||||||||||| |||||||    
T  16801507 atatat-atgattattgagagatagtctcacccttaccttagtttt 16801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 18929239 - 18929297
Alignment:
Q  186 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacc 18929297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 17240577 - 17240516
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 17240516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 13302295 - 13302244
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 13302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 13323842 - 13323791
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 13323791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 12033499 - 12033448
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 12033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 13312951 - 13312900
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||| |||||| | |||||||||||||| ||||| |||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttacc 13312900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 17131732 - 17131783
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 17131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 51301589 - 51301640
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttacc 51301640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 10389557 - 10389447
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10389557 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10389458  T
Q  234 tcacccttacc 244  Q
     ||||||||||    
T  10389457 ccacccttacc 10389447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 10414646 - 10414536
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10414646 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10414547  T
Q  234 tcacccttacc 244  Q
     ||||||||||    
T  10414546 ccacccttacc 10414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 10421316 - 10421206
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10421316 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10421217  T
Q  234 tcacccttacc 244  Q
     ||||||||||    
T  10421216 ccacccttacc 10421206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 16801027 - 16801080
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||| ||||| ||||  || |||||||| ||||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacc 16801080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 988 - 1237
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  988 tacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattatattac 1086  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  1087 aagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttca 1185  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1186 ggaattatagattatgattattgagagatagtctcacccttaccttagtttt 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 49989 - 50238
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  49989 tacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattatattac 50087  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| ||||||||| |||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  50088 aagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttca 50186  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50187 ggaattatagattatgattattgagagatagtctcacccttaccttagtttt 50238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 23057760 - 23057990
Alignment:
Q  14 caattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaaca 113  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  114 cgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatt 213  Q
     |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  23057860 tgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagatt 23057959  T
Q  214 atgattattgagagatagtctcacccttacc 244  Q
    |||||||| ||||||||||||||||||||||    
T  23057960 atgattatcgagagatagtctcacccttacc 23057990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29614393 - 29614142
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||  | |||    
T  29614393 tacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacatt-caatac 29614295  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattta-ttttccaaaactaagcaattaggtcaattttc 199  Q
    ||| ||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||| || |||| |||||||||||||    
T  29614294 aagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttc 29614195  T
Q  200 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29614194 agaaattatagattatgattattgagagatagtctcacccttaccttagtttt 29614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 23839016 - 23839250
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||||  ||||    
T  23839016 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattacaacagaat 23839114  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaa-actaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  23839115 taacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaattttcagaaatta 23839213  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||||||||||||||    
T  23839214 tagattatgattattgagagatagtctcacccttacc 23839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 10986418 - 10986184
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||||  ||||    
T  10986418 ttcatcaattcatccaatcaatcgtaa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattacaacagaat 10986320  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  10986319 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaatttttagaaatta 10986221  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| |||||||||||||||||||    
T  10986220 tagattatgattattgaaagatagtctcacccttacc 10986184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 18800255 - 18800497
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| | |||  ||||||||||||| |||||||| || ||| | |||||||| ||||||| ||||||| | |||||||  ||||    
T  18800255 ttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcacattacaacagaat 18800353  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tattttccaaaactaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18800354 taacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaatta 18800452  T
Q  208 tagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  18800453 tagattatgattattgagagatagtctcacccttacattagtttt 18800497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 4477678 - 4477909
Alignment:
Q  12 atcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaa 111  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||||     
T  4477678 atcaaatcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattag 4477776  T
Q  112 cacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaattatag 210  Q
    || ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  4477777 catgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatag 4477875  T
Q  211 attatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||    
T  4477876 attatgattattgagagatagtctcacccttacc 4477909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 930227 - 930091
Alignment:
Q  115 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatta 214  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| |||||||||    
T  930227 gatcattaccca-ttcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagatta 930129  T
Q  215 tgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||||||||||||||||||||||||||||| |||||||    
T  930128 tgattattgagagatagtctcacccttaccttagtttt 930091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 21565449 - 21565215
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| | |||  ||||||||||||||||||||||||| ||  | |||||||| |||||||| |||| | | |||||||   |||    
T  21565449 ttcatcaattcatccaatcaattatat-tttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcacattacaacataat 21565351  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||||||||| |||||| | ||||||||||| |||||||||||||||||||  |   |||   ||||||||||||||||||||| |||||||     
T  21565350 taacatgatcattaccc-attccccttagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttccgaaattaa 21565252  T
Q  209 agattat-gattattgagagatagtctcacccttacc 244  Q
    | |||||  |||| |||||||||||||||||||||||    
T  21565251 atattatctattaatgagagatagtctcacccttacc 21565215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 12168305 - 12168422
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 12168403  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  12168404 tcacccttaccttagtttt 12168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 19287214 - 19287331
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19287312  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  19287313 tcacccttaccttagtttt 19287331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 19785982 - 19785865
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  ||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtc 19785884  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  19785883 tcacccttaccttagtttt 19785865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 19878398 - 19878515
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19878496  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  19878497 tcacccttaccttagtttt 19878515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 19884174 - 19884291
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19884272  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||| ||| |||||||    
T  19884273 tcaccctaaccttagtttt 19884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 34640069 - 34639990
Alignment:
Q  165 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttacc 34639990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 34646743 - 34646664
Alignment:
Q  165 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttacc 34646664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 25469816 - 25469708
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||| ||||| |||||||||   |||  |||||||||||||| |  ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  234 tcacccttacc 244  Q
    |||||||||||    
T  25469718 tcacccttacc 25469708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 24512899 - 24512851
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcaccct 240  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccct 24512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 9187498 - 9187547
Alignment:
Q  195 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacc 9187547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 25348486 - 25348539
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacc 25348539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 25598643 - 25598696
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||| |||| |||||||| |||||||| ||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacc 25598696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 25397172 - 25397225
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacc 25397225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 2286823 - 2286770
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||| ||||| ||||  || |||||||| ||||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacc 2286770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 19471391 - 19471338
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacc 19471338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 31252413 - 31252474
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttacc 31252474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 111717 - 111942
Alignment:
Q  28 attcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaa 127  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||     
T  111717 attcatcaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccat 111816  T
Q  128 ttcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttcagaaattatagattatgattattgaga 226  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  111817 ttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgaga 111916  T
Q  227 gatagtctcacccttaccatagtttt 252  Q
    |||||||||||||||||| |||||||    
T  111917 gatagtctcacccttaccttagtttt 111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 8046078 - 8045828
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  8046078 tacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattatattac 8045979  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttca 200  Q
    ||| |||||||||  ||| ||||||| |||||||||||||  || | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  8045978 aagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttca 8045880  T
Q  201 gaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  8045879 gaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 8045828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 11847916 - 11848173
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  11847916 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattat 11848015  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaa------tttattttccaaaactaagcaattaggtcaa 194  Q
    ||  | ||||||| |||||||||||| | | |||||||||| |||| ||||||||||||||||      || ||||| |||||||| || | ||||||||    
T  11848016 aaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccactaggtcaa 11848115  T
Q  195 ttttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11848116 ttttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 11848173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 53483646 - 53483756
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagt 232  Q
    ||||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagt 53483744  T
Q  233 ctcacccttacc 244  Q
    ||||||||||||    
T  53483745 ctcacccttacc 53483756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 15408139 - 15408191
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 15408191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 8834895 - 8834948
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 8834948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 13888641 - 13888694
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacc 13888694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 14486661 - 14486712
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacc 14486712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 242  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 15245215 - 15245268
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacc 15245268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 15308120 - 15308171
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 242  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcaccctta 15308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 27906266 - 27906315
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcaccctta 242  Q
    ||||||||||||||||| |||||||| ||||| ||||| || ||||||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccaccctta 27906315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 15747592 - 15747552
Alignment:
Q  212 ttatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagtttt 15747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 997 - 746
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||| ||||||||||| || ||||||||||||||||    
T  997 tacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaacaa-gattaagtttttatcctgaacattatattac 899  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttc 199  Q
    ||| | |||| || |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  898 aagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttc 799  T
Q  200 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  798 agaaattatagattatgattattgagagatagtctcacccttaccttagtttt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2143 - 1893
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  2143 tacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacattaaattac 2044  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttc 199  Q
    ||| |||||||||  |||||||||||  | || ||| ||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| |||||    
T  2043 aagagaattaacataatcattaccca--ttccatcaaaatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttc 1946  T
Q  200 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  1945 agaaattatagattatgattattgagatatagtctcacccttaccttagtttt 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 8820 - 8570
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    ||||||||||||||||||||| |||||| | || |||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  8820 tacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacattaaattac 8721  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttc 199  Q
    ||| |||||||||  |||||||||||  | || ||| ||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| |||||    
T  8720 aagagaattaacataatcattaccca--ttccatcataatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttc 8623  T
Q  200 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  8622 agaaattatagattatgattattgagatatagtctcacccttaccttagtttt 8570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 14635 - 14399
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaa 107  Q
    ||||||||||| ||||||||| |||||  ||||||||| ||||||||||||||| || || ||||||||||||||||| |||||| | |||||||  |||    
T  14635 attcatcaatttatccaatcaatcatat-tttcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaa 14537  T
Q  108 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaatt 206  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  14536 ttaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatt 14437  T
Q  207 atagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14436 atagattatgattattgagagatagtctcacccttacc 14399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 44477441 - 44477674
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  44477441 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 44477539  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44477540 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 44477638  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  44477639 agattatgattattgagagatagtctcacccttacc 44477674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 44492599 - 44492832
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  44492599 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 44492697  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44492698 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 44492796  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  44492797 agattatgattattgagagatagtctcacccttacc 44492832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8727979 - 8727736
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 100  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||    
T  8727979 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattac 8727880  T
Q  101 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttc 199  Q
    ||  ||||||||| ||||| ||||| || ||| ||||||||||| | ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  8727879 aacagaattaacatgatcaataccc-atacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttc 8727781  T
Q  200 agaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  8727780 agaaattatagattatgattattgagggataatctcacccttacc 8727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 23866423 - 23866674
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 99  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||||| |||| |||||| ||||||||||  ||||||||||||||||||    
T  23866423 tacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaacaa-gattaagtttatattctgaacattatatta 23866521  T
Q  100 caagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt 198  Q
    |||   ||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  23866522 caaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-ttt 23866620  T
Q  199 cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  23866621 caggaattataaattatgattattgagagatagtctcacccttaccttagtttt 23866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 27941091 - 27940946
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| | || ||  | ||||||| |||||||||||||||||| |||||||  ||||    
T  27941091 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcataacaacagtatagattaaattttcattctgaacattacattacaacagaat 27940993  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaa 156  Q
    ||||| ||||| ||||| |||||| ||||||||||||| |||||||||    
T  27940992 taacatgatcaataccc-attcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 17054533 - 17054642
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 17054631  T
Q  234 tcacccttacc 244  Q
    |||||||||||    
T  17054632 tcacccttacc 17054642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 18614271 - 18614382
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctctgactatac 289  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||| || | |||||||||||| |||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta-atttagaagaaaacgcacaatgatcggattctctgactctac 18614369  T
Q  290 ttgttcatctcac 302  Q
    |||||| ||||||    
T  18614370 ttgttcttctcac 18614382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 23482117 - 23482056
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23482056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 39364919 - 39364972
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacc 39364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 29643440 - 29643389
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 29643389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 14056619 - 14056567
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttacc 14056567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 25111976 - 25112028
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttacc 25112028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 24320725 - 24320674
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 24320674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 21931696 - 21931749
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacc 21931749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 19661690 - 19661457
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||    
T  19661690 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaat 19661592  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  19661591 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattat 19661493  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||| |||||| |||||||||||||||    
T  19661492 agattatgattatcgagagaaagtctcacccttacc 19661457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 6483536 - 6483769
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  6483536 ttcatcaattcatcccatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 6483634  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6483635 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 6483733  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  6483734 agattatgattattgagagatagtctcacccttacc 6483769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 6487003 - 6487236
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  6487003 ttcatcaattcatcccatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 6487101  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6487102 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 6487200  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  6487201 agattatgattattgagagatagtctcacccttacc 6487236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 79 - 252
Target Start/End: Original strand, 26583715 - 26583886
Alignment:
Q  79 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaac 178  Q
    |||||||||||||| |  ||||||   | |||||| |||||||||||  ||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  26583715 ttcattctgaacatcactttacaacatatttaacatgatcattaccct-ttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaac 26583813  T
Q  179 taagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26583814 tatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 26583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 23878826 - 23879059
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |  ||  |||||||||||||||||||||| || ||  | |||||||| ||||||||||||||| | |||||||   |||    
T  23878826 ttcatcaattcatccaatcaattctat-tttcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacatcacattacaacataat 23878924  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||||||||| |||||| ||||||||||||   ||||||||||||||||||| |   |||   ||||||||||||||||||||  ||||||||    
T  23878925 taacatgatcattaccccattcccctcagaatcatca-acaaccctaaccctcaatttaatcctcaaggttaagcaattaggtcaatttttcgaaattat 23879023  T
Q  209 agattatgattattgagagatagtctcacccttacc 244  Q
    | || || |||| |||||||||||||||||||||||    
T  23879024 atataattattaatgagagatagtctcacccttacc 23879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 23089292 - 23089058
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| | |||  ||||||||||||||||||||||||| ||  | |||||||| |||||||| |||| | | |||||||   |||    
T  23089292 ttcatcaattcatccaatcaattatat-tttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcacattacaacataat 23089194  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||||||||| |||||| | ||||||||||| |||||||||||||||||||  |   |||   ||||||||||||||||||||| |||||||     
T  23089193 taacatgatcattaccc-attccccttagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttccgaaattaa 23089095  T
Q  209 agattat-gattattgagagatagtctcacccttacc 244  Q
    | |||||  |||| |||||||||||||||||||||||    
T  23089094 atattatctattaatgagagatagtctcacccttacc 23089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 23101700 - 23101466
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    ||||| |||||||||||||| | |||  |||||||||||||||||||||| || ||  | |||||||| |||||||| |||| | | |||||||   |||    
T  23101700 ttcatgaattcatccaatcaattatat-tttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacgtcacattacaacataat 23101602  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||  |   |||   ||| ||||||||||||||||| |||||||     
T  23101601 taacatgatcattaccc-attcccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaaacaattaggtcaattttccgaaattac 23101503  T
Q  209 agattat-gattattgagagatagtctcacccttacc 244  Q
    | |||||  |||| |||||||||||||||||||||||    
T  23101502 atattatctattaatgagagatagtctcacccttacc 23101466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 5706137 - 5706027
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagt 232  Q
    ||||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagt 5706039  T
Q  233 ctcacccttacc 244  Q
    ||||||||||||    
T  5706038 ctcacccttacc 5706027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 23265133 - 23265194
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23265194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 23280201 - 23280262
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 21908353 - 21908411
Alignment:
Q  186 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacc 21908411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 24661576 - 24661629
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacc 24661629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 10577 - 10628
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 10628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 25180984 - 25180933
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 25180933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 26885133 - 26885233
Alignment:
Q  144 cattaaaccctaaccctcaatttattttccaa-aactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctta 242  Q
    ||||| |||||||  |||||||| || ||||| |||||  | ||||| | ||||||||||||||||| |||| ||||||||| ||||| || ||||||||    
T  26885133 cattataccctaattctcaattttttctccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccaccctta 26885231  T
Q  243 cc 244  Q
    ||    
T  26885232 cc 26885233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 20437261 - 20437027
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||||   |||    
T  20437261 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattacaacataat 20437163  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  20437162 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 20437064  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||||||||||||||    
T  20437063 tagattatgattattgagagatagtctcacccttacc 20437027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 41111977 - 41112094
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 41112075  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  41112076 tcacccttaccttagtttt 41112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 32651563 - 32651682
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctct 281  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||| | ||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 32651661  T
Q  282 gactatacttgttcatctcac 302  Q
    ||||  |||||||| ||||||    
T  32651662 gactccacttgttcttctcac 32651682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 18712790 - 18712851
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacc 18712851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 19663572 - 19663520
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacc 19663520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 10811839 - 10811786
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacc 10811786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 20805320 - 20805373
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 20805373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 11158093 - 11158145
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacc 11158145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 20851187 - 20851136
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20851136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 20857814 - 20857763
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20857763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 21706276 - 21706327
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 21706327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 21710818 - 21710869
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 21710869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 10433 - 10199
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  10433 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 10335  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  10334 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 10236  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10235 tagattatgattattgagagatagtcccacccttacc 10199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 1763 - 1529
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  1763 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 1665  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  1664 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 1566  T
Q  208 tagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1565 tagattatgattattgagagatagtcccacccttacc 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 11159 - 11401
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| | |||  ||||||||||||| ||||||||||| ||  |  ||||||| ||||||| ||||||| | |||||||  ||||    
T  11159 ttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacatcacattacaacagaat 11257  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tattttccaaaactaagcaattaggtcaattttcagaaatta 207  Q
    ||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11258 taacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaatta 11356  T
Q  208 tagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  11357 tagattatgattattgagagatagtctcacccttaccttagtttt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 109 - 350
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaa 107  Q
    ||||||||||| |||||| || |||||| |||||| ||||||||||||||| ||  |||| ||||||||| |||| ||||||||  ||| ||||||  ||    
T  109 attcatcaatttatccaaccaatcataa-tttcaaccaatttatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaa 207  T
Q  108 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaatta 207  Q
    |||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  208 ttaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaatta 305  T
Q  208 tagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  306 tagattatggttattgagagatagtctcacccttaccttagtttt 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 17985 - 18229
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagg-ga 106  Q
    ||||||||||| ||||||||| ||  ||||||||||||||| |||||||||||| ||||| || |||||||||||||||| |||| | |||||||   ||    
T  17985 attcatcaatttatccaatcaatcc-aaatttcaatcaattcatgatcacagcaacaacataggttaagttttcattctggacatcacattacaaacaga 18083  T
Q  107 attaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaat 205  Q
    ||||||| || ||||||| | ||||| | ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  18084 attaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaaaat 18182  T
Q  206 tatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  18183 tatagattatgattattgagagatagtctcacccttaccttagtttt 18229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 904 - 1039
Alignment:
Q  165 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgca 264  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 1003  T
Q  265 caacgaccagattctctgactatacttgttcatctc 300  Q
    |||||||| |||||||||||||||||||||| ||||    
T  1004 caacgaccggattctctgactatacttgttcttctc 1039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 8049 - 8184
Alignment:
Q  165 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgca 264  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 8148  T
Q  265 caacgaccagattctctgactatacttgttcatctc 300  Q
    |||||||| |||||||||||| ||||||||| ||||    
T  8149 caacgaccggattctctgactctacttgttcttctc 8184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 806 - 899
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaa 102  Q
    ||||||||||| ||||||||  |||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  806 attcatcaatttatccaatccctcataa-ttccaatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaa 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 7951 - 8044
Alignment:
Q  8 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaa 102  Q
    ||||||||||| ||||||||  |||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  7951 attcatcaatttatccaatccctcataa-ttccaatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaa 8044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 3531 - 3296
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| | |||  ||||||||||||| ||||||||||| ||  | |||||||| ||||||||||||||| | |||||||   |||    
T  3531 ttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacatcacattacaacaaaat 3433  T
Q  109 taacacga-tcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaatta 207  Q
    ||||| || ||||||||| |||||| ||||||||||||| |||||||||||||||||||  |  ||||   ||||||||||||||||||||| |||||||    
T  3432 taacatgattcattaccc-attcccctcagaatcatcatcaaaccctaaccctcaattttatccccaaggttaagcaattaggtcaattttccgaaatta 3334  T
Q  208 tagattat-gattattgagagatagtctcacccttacc 244  Q
     | |||||  |||| |||||||||||||||||||||||    
T  3333 catattatctattaatgagagatagtctcacccttacc 3296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 30772 - 30917
Alignment:
Q  108 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaactaagcaattaggtcaattttcagaaatt 206  Q
    |||||| |||| |||| | |||||| ||| ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||||||||||||||||||||||    
T  30772 ttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaatt 30871  T
Q  207 atagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  30872 atagattatgattattgagagatagtctcacccttaccttagtttt 30917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 3859 - 3625
Alignment:
Q  9 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 108  Q
    |||||||||||||||||||| | |||  |||||||||||||||||||||| || ||  | |||||||| |||||||| |||||| | |||||||   |||    
T  3859 ttcatcaattcatccaatcaattatat-tttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcacattacaacataat 3761  T
Q  109 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 208  Q
    ||||| ||||||||||| || ||| ||||||||||||| |||||||||||||||||||  |   |||   ||||||||||||||||||||| |||||||     
T  3760 taacatgatcattaccc-atccccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttccgaaattac 3662  T
Q  209 agattat-gattattgagagatagtctcacccttacc 244  Q
    | |||||  |||| |||||||||||||||||||||||    
T  3661 atattatctattaatgagagatagtctcacccttacc 3625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3471 - 3558
Alignment:
Q  1 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctga 88  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3471 tacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 1845 - 1728
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 1747  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  1746 tcacccttaccttagtttt 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 5868 - 5751
Alignment:
Q  134 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 233  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 5770  T
Q  234 tcacccttaccatagtttt 252  Q
    ||||||||||| |||||||    
T  5769 tcacccttaccttagtttt 5751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 116887 - 116998
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctct 281  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||| | ||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 116985  T
Q  282 gactatacttgtt 294  Q
    ||||  |||||||    
T  116986 gactccacttgtt 116998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 45386 - 45278
Alignment:
Q  136 agaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 234  Q
    ||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtct 45288  T
Q  235 cacccttacc 244  Q
    ||||||||||    
T  45287 cacccttacc 45278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 16811 - 16872
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 16872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 72 - 11
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 11  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 13623 - 13684
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 13684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 101992 - 101931
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacc 101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 17643 - 17695
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttacc 17695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 40587 - 40535
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 40535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 135473 - 135525
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 135525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 22646 - 22596
Alignment:
Q  194 attttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttacc 22596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 34331 - 34279
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacc 34279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 12296 - 12349
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 12349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 1378 - 1438
Alignment:
Q  184 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||| |||||||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 15052 - 15000
Alignment:
Q  192 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacc 15000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 39563 - 39510
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| ||||||||||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacc 39510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 1453 - 1501
Alignment:
Q  196 tttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttacc 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 1967 - 1916
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 1916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 9336 - 9387
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 9387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 10239 - 10290
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttacc 10290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 135438 - 135489
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| ||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttacc 135489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 493082 - 493032
Alignment:
Q  193 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttacc 493032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 680 - 774
Alignment:
Q  159 ctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 252  Q
    |||||||||||||| | |||||  |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || |||||||||| |||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagtttt 774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 5922 - 5861
Alignment:
Q  183 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttacc 5861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 2684 - 2631
Alignment:
Q  191 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 244  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacc 2631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University