View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16193_high_3 (Length: 453)
Name: NF16193_high_3
Description: NF16193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16193_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 11119381 - 11119817
Alignment:
| Q |
1 |
acatcatattcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacctatcatcaaccccagccatcctctctt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119381 |
acatcatcttcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacctatcatcaaccccagccatcctctctt |
11119480 |
T |
|
| Q |
101 |
cttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11119481 |
cttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgttgtctgcttcaccaacattgccttcaacttc |
11119580 |
T |
|
| Q |
201 |
atccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggttcaacatacaattcaacatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119581 |
atccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaattcaccttaggttcaacatacaattcaacatca |
11119680 |
T |
|
| Q |
301 |
cacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtcttcatccaatgaaccactctcatgtttccacc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119681 |
cacttcttatcacgagcataattagacattgcagttgcatcagtatcattactgaatggcttgaggtcttcatccaatgaaccactctcatgtttccacc |
11119780 |
T |
|
| Q |
401 |
ataaccttactaacccttcatcaaaagtatcatccat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119781 |
ataaccttactaacccttcatcaaaagtatcatccat |
11119817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 81 - 434
Target Start/End: Original strand, 12205970 - 12206311
Alignment:
| Q |
81 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
180 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
181 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
280 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttagg-- |
12206167 |
T |
|
| Q |
281 |
caacatacaattcaacatcacacttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtcttcatccaatga |
380 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
12206168 |
----------ttcaacatcacagttcttatcacgagcataatcagacattaaggttgcatcagtatcattcctgattggcttgacgtcttcatccaatga |
12206257 |
T |
|
| Q |
381 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12206258 |
accactctcatgtttccaccataaccttactaacccttcatcaaaagtatcatc |
12206311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 2 - 437
Target Start/End: Original strand, 32741098 - 32741521
Alignment:
| Q |
2 |
catcatattcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacctatcatcaaccccagccatcctctcttc |
101 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
32741098 |
catcatcttcattagcattgttagggtcaagttggggttctgaaatgacattat------------caaacccatcatcaaccgcagccatcttctcttc |
32741185 |
T |
|
| Q |
102 |
ttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttca |
201 |
Q |
| |
|
|||||| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||| |||| |
|
|
| T |
32741186 |
ttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcgatgtctacttcaccaacatcgccttcaatttca |
32741285 |
T |
|
| Q |
202 |
tccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggttcaacatacaattcaacatcac |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32741286 |
tccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaattcaccttaggttcaacatacaattcaacatcgc |
32741385 |
T |
|
| Q |
302 |
acttcttatcacgagcataattagacattgtagttgcatcagtatcattcctgaatggcttaaggtcttcatccaatgaaccactctcatgtttccacca |
401 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32741386 |
acttgttatcacgagcataatcagacattgcagttgcatcagtatcattcctgaatggcttgaggtcttcatccaatgaaccactctcatgtttccacca |
32741485 |
T |
|
| Q |
402 |
taaccttactaacccttcatcaaaagtatcatccat |
437 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||| |
|
|
| T |
32741486 |
tagctttactaactattcatcaaaagtatcatccat |
32741521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University