View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16193_high_4 (Length: 404)
Name: NF16193_high_4
Description: NF16193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16193_high_4 |
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| [»] scaffold0129 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 13473298 - 13473653
Alignment:
| Q |
23 |
catcatcagatatatcacaatacaaacgtcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacatt |
122 |
Q |
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| T |
13473298 |
catcatcagatatatcacaatacaaacgtcaaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacatt |
13473397 |
T |
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| Q |
123 |
agatagacactcattaaggctagggtaaacgaccttaatttccttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaa |
222 |
Q |
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| T |
13473398 |
agatagacactcgttaaggctaggagaaacgaccttaatttccttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaa |
13473497 |
T |
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| Q |
223 |
ataatgccattaatagcagaacctaaaatatgaggaagaaaattatcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaa |
322 |
Q |
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| T |
13473498 |
ataatgccattaatagcagaacctaaaatatgaagaagaaaattgtcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaa |
13473597 |
T |
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| Q |
323 |
acctctcacctgaaagcatatacaacatactcggaaccaaaaacatattgatgatg |
378 |
Q |
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| T |
13473598 |
acctctcacctgaaagcatatacaacatactcgaaaccaaaaacatattgaagatg |
13473653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 26606709 - 26606657
Alignment:
| Q |
50 |
gtcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaaga |
102 |
Q |
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| T |
26606709 |
gtcgaatcaccttgtaatcatctctaacagaatcataaccaaatccatgaaga |
26606657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 27735998 - 27736033
Alignment:
| Q |
65 |
aatcatctctaacatgatcataaccaaatgcatgaa |
100 |
Q |
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| T |
27735998 |
aatcatctctaacatgatcataaccaaatccatgaa |
27736033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 9801 - 9764
Alignment:
| Q |
313 |
ttattctcaaacctctcacctgaaagcatatacaacat |
350 |
Q |
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| T |
9801 |
ttattctcaaacctctcaccagaaagcaaatacaacat |
9764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 17601 - 17650
Alignment:
| Q |
51 |
tcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaa |
100 |
Q |
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| T |
17601 |
tcgaatgactttgtagtcatctctaacatggtcataaccaaatccatgaa |
17650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 33997 - 34046
Alignment:
| Q |
51 |
tcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaa |
100 |
Q |
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| T |
33997 |
tcgaatgaccttgtagtcatctctaacatgctcataaccaaatccatgaa |
34046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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