View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16193_high_8 (Length: 367)
Name: NF16193_high_8
Description: NF16193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16193_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 3 - 352
Target Start/End: Complemental strand, 13039783 - 13039429
Alignment:
| Q |
3 |
gacatgtagaaacgatgtgtggagggacaataacaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacgagcacacaatt |
102 |
Q |
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| T |
13039783 |
gacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattttacgagcacacaatt |
13039684 |
T |
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| Q |
103 |
tatctaaaccgggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacagtatggaatgggg |
202 |
Q |
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| T |
13039683 |
tatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaatatggaatgggg |
13039584 |
T |
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| Q |
203 |
aaccttgttttggattgcagatgatggcattctattaatcaagtatcctgcagtgaggacagcatcaccccaaaatttcaaaggaacattggcattaata |
302 |
Q |
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| T |
13039583 |
aaccttgttttggattacagatgatggcattctattaatcaagtatcctgtagtgaggacagcatcaccccaaaatttcaaaggaacattggcattaata |
13039484 |
T |
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| Q |
303 |
agcaaagtac-----gtttcaattatatgacggtgtttacgttcagcaatgccat |
352 |
Q |
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| T |
13039483 |
agcaaagtacgtgttgtttcaattatatgacgatgtttacgttcaacaatgccat |
13039429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 37918677 - 37918721
Alignment:
| Q |
12 |
aaacgatgtgtggagggacaataacaccgatatcctttttgaact |
56 |
Q |
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| T |
37918677 |
aaacgatgtgtagatggacaataacaccgataccctttttgaact |
37918721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 20705321 - 20705240
Alignment:
| Q |
97 |
acaatttatctaaaccgggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttc |
178 |
Q |
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| T |
20705321 |
acaacttatctaaacctggaaaaagatcatgaacaaaacaagtacttccaaaaacacgtggattaatatgaaacaaaggttc |
20705240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 3 - 352
Target Start/End: Complemental strand, 17725178 - 17724811
Alignment:
| Q |
3 |
gacatgtagaaacgatgtgtggagggacaataacaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacgagcacacaatt |
102 |
Q |
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| T |
17725178 |
gacatgtagaagcgatgtgtggagggacaatagcaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacgagcacacaatt |
17725079 |
T |
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| Q |
103 |
tatctaaaccgggagtaagatcatgaacaaagcaagtggatccaaaaacccgaggagcaatacgaaacaaaggttcatcagggaacagtatggaatgggg |
202 |
Q |
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| T |
17725078 |
tatctaaacctggagtaagatcatgaacaaagcaagtggatccaaaaatccgaggagcaatacgaaacaaaggttcatcagggaacaatatggaatgggg |
17724979 |
T |
|
| Q |
203 |
aaccttgttttggattgcagatgatggcattctatt-------------aatcaagtatcctgcagtgaggacagcatcaccccaaaatttcaaaggaac |
289 |
Q |
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| T |
17724978 |
aaccttgttttggattgcagatgatggcattctattaatccattctatcaatcaagtatcctgcagtgaggacagcatcaccccaaaatttcaaaggaac |
17724879 |
T |
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| Q |
290 |
attggcattaataagcaaagtac-----gtttcaattatatgacggtgtttacgttcagcaatgccat |
352 |
Q |
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| T |
17724878 |
attggcatgaataagcaaagtacgtgctgtttcaattatatgacggtgtttacgttcagcaatgccat |
17724811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 11025854 - 11025985
Alignment:
| Q |
4 |
acatgtagaaacgatgtgtggagggacaataacaccgatatcctttttgaactcttgaatagcctagaaagacacatttaattgcacgagcacacaattt |
103 |
Q |
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| T |
11025854 |
acatgtagaagctatgcgttgatggacaatagcacttatatcctttctaaactcttgaatcgctgagaaagacacatttaactgcacgagcaaacatttt |
11025953 |
T |
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| Q |
104 |
atctaaaccgggagtaagatcatgaacaaagc |
135 |
Q |
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| T |
11025954 |
atctaaaccttgagtaagatcatgaataaagc |
11025985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 36999158 - 36999112
Alignment:
| Q |
12 |
aaacgatgtgtggagggacaataacaccgatatcctttttgaactct |
58 |
Q |
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| T |
36999158 |
aaacgatgtgtagatggacaataacaccggtaccctttttgaactct |
36999112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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