View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_high_6 (Length: 340)
Name: NF16194_high_6
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 43142515 - 43142193
Alignment:
| Q |
1 |
ttaacgactgaaaatcaaatataatggaacctgttctaaaccggcccagaccgcttccgaagcataatccggtgttttccaaataatggtttggtatatg |
100 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43142515 |
ttaatgactgaaaatcaaatataatggaaccggttctaaaccggcccaaaccgcttccgaagcataattcggtgttttccaaataatggtttggtatatg |
43142416 |
T |
|
| Q |
101 |
aaccttaaccaaaaaatattgggttatatggtttggttaaccatgcacagcccattgatgaagacatgttatcattagtaccattggttttaataggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142415 |
aaccttaaccaaaaaatattgggttatatggtttggttaaccatgcacagcccattgatgaagacatgttatcattagtaccattggttttaataggtta |
43142316 |
T |
|
| Q |
201 |
aaacatattccggatgaagatatgtgatgatgtacaatattattagaccactctctttttctttcgttttctctttggtgtacactaaacattttccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142315 |
aaacatattccggatgaagatatgtgatgaggtacaacattattagaccactctctttttctttcgttttctctttggtgtacactaaacattttccaaa |
43142216 |
T |
|
| Q |
301 |
actttacaccgagctttctaatt |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
43142215 |
actttacaccgagctttctaatt |
43142193 |
T |
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