View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_low_1 (Length: 593)
Name: NF16194_low_1
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Complemental strand, 48694228 - 48693664
Alignment:
| Q |
18 |
gtttccagtacacaacagtatcatactcagcatcaatttcaactctcttattttgtacaacaactttactttttccgcaaggcacgtcttgttgccatat |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
48694228 |
gtttccagtacacaacagtatcatactcggcatcaatttcaactctcttattttgtacaacaacattactttttctgcaaggcacgtcttgttgccatat |
48694129 |
T |
|
| Q |
118 |
atcataaatatcatccaatatagaaatcggtcgtttatctcctccatatctttcgtcctcaaatctatgctcttccaatatctccaacttccttagctca |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48694128 |
atcataaatatcatccaatatagaaaccggtcgtttatctcctccatatctttcgtcctcaaatctatgctcttccaatatctccaacttccttagctca |
48694029 |
T |
|
| Q |
218 |
acatcctgtctttgtttgtttagattgtcgagttcttctcttagaagacgcgccacgctcgcctgcttatactcccaatgtttcataagataggctaatt |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48694028 |
acatcctgtctttgtttgtttaggttgtcgagttcttctcttagaagacgcgccacgctcgcctgcttatactcccaatgtttcataagataggctaatt |
48693929 |
T |
|
| Q |
318 |
gagaagaacctttttctgtgaaattcgtgagctcaatgagacgcttgaaatcggctatagttgtaacttcatctatgattgatacttcttctaacatatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48693928 |
gagaagaacctttttctgtgaaattcgtgagctcaatgagacgcttgaaatcagctatagttgtaacttcatctatgattgatacttcttctaacacatc |
48693829 |
T |
|
| Q |
418 |
ttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattgaaggaaggacttcaatttccataatatcc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48693828 |
ttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattgaaggaaggacttcaatttccataatatcc |
48693729 |
T |
|
| Q |
518 |
tcaacacactctttttccataatatcttctattctatactacacaactttgtgatatcaattctt |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48693728 |
tcaacacactctttttccataatatcttctattctatactacacaactttgtgatatcaattctt |
48693664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 196 - 491
Target Start/End: Original strand, 3456772 - 3457064
Alignment:
| Q |
196 |
tatctccaacttccttagctcaacatcctgtctttgtttgtttagattgtcgagttcttctcttagaagacgcgccacgctcgcctgcttatactcccaa |
295 |
Q |
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||||||||| || ||| ||||||| |||| ||||||||| | |||||||| || ||||||| ||||| || || || |||| ||||||||||||||| |
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| T |
3456772 |
tatctccaattttctttgctcaacttccttcctttgtttgctaagattgtcaagctcttctcgaagaagccgaaccgcgttcgcttgcttatactcccaa |
3456871 |
T |
|
| Q |
296 |
tgtttcataagataggctaattgagaagaacctttttctgtgaaattcgtgagctcaatgagacgcttgaaatcggctatagttgtaacttcatctatga |
395 |
Q |
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|||| ||| | ||| || |||||||| || ||||| ||||| |||| || ||||| || | | | ||||| ||||| | || ||| |||| || |
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| T |
3456872 |
tgttgcattaaataagccaattgagatgaccctttatctgtataatttgtaagctccattaatctttgaaaatcagctattgctgg---ttcttctaaga |
3456968 |
T |
|
| Q |
396 |
ttgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattgaag |
491 |
Q |
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||| ||||||||| |||||||||||||| ||||||| |||||||| ||||| || ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
3456969 |
ttgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacattgaag |
3457064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 3456585 - 3456647
Alignment:
| Q |
18 |
gtttccagtacacaacagtatcatactcagcatcaatttcaactctcttattttgtacaacaa |
80 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||| |||||| || || ||||||| |
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| T |
3456585 |
gtttccagtaaacaacagtatcatactcagcctcaatttcaattctcttgttctgaacaacaa |
3456647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3480972 - 3481026
Alignment:
| Q |
18 |
gtttccagtacacaacagtatcatactcagcatcaatttcaactctcttattttg |
72 |
Q |
| |
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|||||||||| ||||| | |||||||||||| |||||||||||||| || ||||| |
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| T |
3480972 |
gtttccagtaaacaacggaatcatactcagcctcaatttcaactcttttgttttg |
3481026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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