View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_low_10 (Length: 318)
Name: NF16194_low_10
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 22996457 - 22996565
Alignment:
| Q |
38 |
aataagttatttggatttattcattattaataacttacacatcaacagttagctctatttcattttaacgagacggtttgaatcttagaccagctgcatt |
137 |
Q |
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| T |
22996457 |
aataagttatttggatttattcattattaataacttaca--tcaatagatagctctatttcattttaacgagacggtttgaatcttagatcagctgcatt |
22996554 |
T |
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| Q |
138 |
acataatatgt |
148 |
Q |
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|||| |||||| |
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| T |
22996555 |
acatgatatgt |
22996565 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 37559178 - 37559103
Alignment:
| Q |
216 |
tattcaacatataaatcagaaacatcaatgcatagtttgtccatggcgtgtggaatttcaagtttgtattatatac |
291 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37559178 |
tattcaacatataaatcagaaacatgcatgcatagtttgtccatggcgtgtggaatctcaagtttgtattatatac |
37559103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 21359502 - 21359560
Alignment:
| Q |
235 |
aaacatcaatgcatagtttgtccatggcgtgtggaatttcaagtttgtattatatacct |
293 |
Q |
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| T |
21359502 |
aaacatccatgcatagtttgtccttggcatgtggaatcccaagcttgtattatatacct |
21359560 |
T |
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