View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16194_low_11 (Length: 299)

Name: NF16194_low_11
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16194_low_11
NF16194_low_11
[»] chr8 (27 HSPs)
chr8 (1-125)||(9480046-9480174)
chr8 (187-274)||(37101574-37101661)
chr8 (184-240)||(45101525-45101581)
chr8 (186-240)||(32175085-32175139)
chr8 (186-240)||(34474080-34474134)
chr8 (186-240)||(42543368-42543422)
chr8 (185-242)||(28927809-28927865)
chr8 (186-238)||(5502494-5502545)
chr8 (193-274)||(38576505-38576586)
chr8 (146-185)||(9480005-9480044)
chr8 (185-236)||(11879376-11879427)
chr8 (185-236)||(11896792-11896843)
chr8 (186-240)||(23258162-23258215)
chr8 (186-240)||(30925542-30925596)
chr8 (184-242)||(39719127-39719185)
chr8 (186-240)||(43290759-43290813)
chr8 (185-274)||(1179472-1179560)
chr8 (190-242)||(28570300-28570352)
chr8 (190-242)||(28577893-28577945)
chr8 (186-245)||(42768009-42768068)
chr8 (184-242)||(14029128-14029186)
chr8 (185-235)||(21273597-21273646)
chr8 (190-240)||(38128418-38128467)
chr8 (186-240)||(40413251-40413304)
chr8 (184-242)||(41703443-41703501)
chr8 (191-240)||(9963815-9963864)
chr8 (188-224)||(20473924-20473960)
[»] chr1 (19 HSPs)
chr1 (180-274)||(5304712-5304804)
chr1 (186-240)||(15061975-15062029)
chr1 (187-240)||(31480023-31480076)
chr1 (186-235)||(48872839-48872888)
chr1 (187-242)||(2362497-2362551)
chr1 (185-232)||(8391226-8391273)
chr1 (186-240)||(45740432-45740485)
chr1 (184-242)||(49425863-49425921)
chr1 (187-231)||(4638063-4638107)
chr1 (184-240)||(51571556-51571611)
chr1 (185-240)||(31703367-31703422)
chr1 (207-242)||(46003593-46003628)
chr1 (193-235)||(5367936-5367978)
chr1 (191-245)||(45272050-45272104)
chr1 (191-232)||(7503603-7503644)
chr1 (199-240)||(25859716-25859757)
chr1 (183-212)||(30631730-30631759)
chr1 (186-222)||(37843323-37843359)
chr1 (184-216)||(52020310-52020342)
[»] chr7 (21 HSPs)
chr7 (186-242)||(7807182-7807238)
chr7 (183-240)||(22330516-22330573)
chr7 (186-240)||(43260120-43260174)
chr7 (193-240)||(7390669-7390716)
chr7 (185-232)||(27778199-27778246)
chr7 (188-242)||(36990167-36990221)
chr7 (189-242)||(32154441-32154494)
chr7 (187-240)||(40717127-40717180)
chr7 (187-240)||(40842536-40842589)
chr7 (191-240)||(19426709-19426758)
chr7 (192-245)||(28597004-28597057)
chr7 (187-240)||(44894363-44894415)
chr7 (190-241)||(47424877-47424928)
chr7 (186-240)||(155869-155922)
chr7 (186-240)||(37351878-37351931)
chr7 (186-240)||(41966458-41966511)
chr7 (186-240)||(43445537-43445590)
chr7 (186-216)||(43657155-43657185)
chr7 (187-240)||(10591282-10591334)
chr7 (187-240)||(12142014-12142066)
chr7 (188-240)||(47193057-47193108)
[»] chr3 (23 HSPs)
chr3 (185-240)||(36318167-36318222)
chr3 (184-274)||(6126550-6126640)
chr3 (185-242)||(43169641-43169698)
chr3 (186-242)||(31997930-31997986)
chr3 (186-242)||(44365179-44365235)
chr3 (186-245)||(51406258-51406317)
chr3 (186-240)||(51650486-51650540)
chr3 (191-273)||(31249214-31249296)
chr3 (187-240)||(46003836-46003889)
chr3 (186-240)||(108559-108613)
chr3 (186-240)||(51464154-51464208)
chr3 (187-240)||(5399045-5399098)
chr3 (184-240)||(7293985-7294040)
chr3 (184-240)||(41309129-41309185)
chr3 (186-240)||(20380777-20380830)
chr3 (186-240)||(46473258-46473311)
chr3 (184-242)||(49130982-49131039)
chr3 (184-225)||(7231892-7231933)
chr3 (187-244)||(20893131-20893188)
chr3 (187-240)||(29706033-29706085)
chr3 (186-235)||(55344183-55344232)
chr3 (186-242)||(9028001-9028056)
chr3 (185-245)||(51672988-51673047)
[»] chr4 (28 HSPs)
chr4 (186-242)||(36792460-36792516)
chr4 (187-235)||(41951670-41951718)
chr4 (190-274)||(41952924-41953008)
chr4 (187-274)||(6953276-6953363)
chr4 (186-240)||(31240778-31240832)
chr4 (184-235)||(22257082-22257133)
chr4 (186-240)||(48326668-48326722)
chr4 (186-240)||(48372113-48372167)
chr4 (184-274)||(48099906-48099995)
chr4 (188-240)||(9567580-9567632)
chr4 (186-240)||(43168604-43168658)
chr4 (189-235)||(47134729-47134775)
chr4 (187-240)||(1580171-1580224)
chr4 (191-232)||(51318838-51318879)
chr4 (185-274)||(52392113-52392200)
chr4 (184-224)||(30973728-30973768)
chr4 (184-240)||(31275276-31275331)
chr4 (180-232)||(51038999-51039051)
chr4 (185-240)||(51389446-51389500)
chr4 (187-242)||(54036419-54036474)
chr4 (186-240)||(1033278-1033331)
chr4 (183-274)||(30778149-30778239)
chr4 (186-240)||(42915107-42915160)
chr4 (191-224)||(940161-940194)
chr4 (187-240)||(15596526-15596578)
chr4 (187-232)||(42169391-42169436)
chr4 (186-242)||(39241190-39241246)
chr4 (186-242)||(55927112-55927167)
[»] chr2 (12 HSPs)
chr2 (178-274)||(19913880-19913976)
chr2 (191-274)||(7428525-7428606)
chr2 (178-232)||(9202396-9202450)
chr2 (193-240)||(45515494-45515541)
chr2 (186-240)||(36133104-36133157)
chr2 (187-240)||(34138925-34138978)
chr2 (185-274)||(12962482-12962570)
chr2 (187-242)||(14714114-14714168)
chr2 (190-240)||(12600178-12600227)
chr2 (186-240)||(26321585-26321639)
chr2 (187-225)||(42283139-42283177)
chr2 (184-274)||(11164262-11164351)
[»] chr5 (23 HSPs)
chr5 (186-240)||(21749488-21749542)
chr5 (187-240)||(3141625-3141678)
chr5 (187-244)||(40223674-40223730)
chr5 (186-274)||(5130265-5130353)
chr5 (188-235)||(3634628-3634675)
chr5 (191-274)||(14206485-14206568)
chr5 (191-274)||(31284287-31284369)
chr5 (187-240)||(10232629-10232682)
chr5 (187-240)||(12661835-12661888)
chr5 (187-240)||(16202850-16202903)
chr5 (192-236)||(34381146-34381189)
chr5 (186-274)||(2117528-2117615)
chr5 (185-240)||(11306826-11306880)
chr5 (187-242)||(12718269-12718323)
chr5 (190-274)||(13613855-13613939)
chr5 (190-225)||(42532261-42532296)
chr5 (186-216)||(6515327-6515357)
chr5 (186-240)||(9403643-9403696)
chr5 (186-235)||(14914505-14914553)
chr5 (186-235)||(29227840-29227889)
chr5 (187-240)||(39595404-39595456)
chr5 (188-240)||(125222-125273)
chr5 (186-242)||(20719903-20719958)
[»] chr6 (8 HSPs)
chr6 (186-241)||(24437572-24437627)
chr6 (186-240)||(10521252-10521306)
chr6 (186-235)||(25166759-25166808)
chr6 (187-240)||(32853033-32853085)
chr6 (186-238)||(9954680-9954732)
chr6 (185-240)||(26378272-26378326)
chr6 (186-274)||(28548908-28548996)
chr6 (184-224)||(1434562-1434602)
[»] scaffold0204 (1 HSPs)
scaffold0204 (186-240)||(27469-27523)
[»] scaffold0001 (1 HSPs)
scaffold0001 (186-243)||(395988-396045)
[»] scaffold0018 (1 HSPs)
scaffold0018 (186-245)||(36126-36185)
[»] scaffold0060 (1 HSPs)
scaffold0060 (187-274)||(6913-6999)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 9480174 - 9480046
Alignment:
Q  1 aagaaaacacaaggaggtcaaatcaaatatgtaacaatttatcattgctctcttaattttcttcttgattgggaagaaaacacaatttcgatgtcgt--- 97  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||       
T  9480174 aagaaaacacaaggaggtcaaatcaaatatgtaataatttatcattactctcataattttcttcttaattaggaagaaaacacaatttcgatgtcgttta 9480075  T
Q  98 -tttgtaggaaatattggaccatatattc 125  Q
     |||||||| |||||||||||||||||||    
T  9480074 atttgtaggcaatattggaccatatattc 9480046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 37101574 - 37101661
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||||||| | ||       |||| |||||||||||||||||    
T  37101574 gagtagtgatatttgaacaaccatttcatacaatttttcgtgacaacttcttttttctctcttttcattggttaaaaacaatggagag 37101661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 45101581 - 45101525
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||    
T  45101581 atagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttttttt 45101525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 32175139 - 32175085
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  32175139 agagtaatgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 32175085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 34474134 - 34474080
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  34474134 agagtaatgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 34474080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 42543368 - 42543422
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||| |||||||||||||||||| || ||||| ||||||||||||||    
T  42543368 agagtagtgataattgaacaaccatttcatacaacttttggtgacaacttctttt 42543422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 28927865 - 28927809
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  28927865 tagagtggtgatatttgaacaaccatttgataaaatttttg-tgacaacttcttttct 28927809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 5502545 - 5502494
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctt 238  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  5502545 agagtagtgatatttgaacaatcatttgatataatttttg-tgacaacttctt 5502494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 38576586 - 38576505
Alignment:
Q  193 tgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||| | || ||||| ||||||||| |||||||||       ||||| ||||||||||||||||    
T  38576586 tgatatttgaacaaccatttcaaacaacttttggtgacaacttattttctttctcttttcattgactaaaaacaatggagag 38576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 9480044 - 9480005
Alignment:
Q  146 atggcaaggtaaccacctacgacaaataacagtattatat 185  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  9480044 atggcaaggtaaccacctacgacaaataacagtatcatat 9480005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 11879376 - 11879427
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttc 236  Q
    ||||||||||||||||||| |||||||||||| |||||||| | ||||||||    
T  11879376 tagagtagtgatatttgaaaaaccatttcatacaatttttggtaacaacttc 11879427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 11896792 - 11896843
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttc 236  Q
    ||||||||||||||||||| |||||||||||| |||||||| | ||||||||    
T  11896792 tagagtagtgatatttgaaaaaccatttcatacaatttttggtaacaacttc 11896843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 23258215 - 23258162
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| | | |||||||| ||||||||||||||    
T  23258215 agagtagtgatatttgaacaaccatttgaaacaatttttg-tgacaacttctttt 23258162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 30925542 - 30925596
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| ||| || ||||| ||||||||| ||||    
T  30925542 agagtagtgatatttgaacaaccattttatacaacttttggtgacaacttttttt 30925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 39719127 - 39719185
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||| ||||||||||| | | |||||||| ||||||||| ||||||    
T  39719127 atagagtagtgatattttaacaaccatttgagacaatttttggtgacaacttattttct 39719185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 43290759 - 43290813
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||| ||||  ||||||||||||||||| ||||||| |||||||    
T  43290759 agagtagtgatatttaaacactcatttcatataattttttatgacaatttctttt 43290813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 274
Target Start/End: Complemental strand, 1179560 - 1179472
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||| |||||| |||| |||||| ||||| ||||||||| |||| ||||       |||||| |||||||||||||||    
T  1179560 tagagtagtgatatttaaacaactatttgatataacttttg-tgacaactttttttttttcttttttcattgataaaaaacaatggagag 1179472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 28570300 - 28570352
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||| ||||||||||||||||||||| || ||||| |||||| |||||||||    
T  28570300 tagtggtatttgaacaaccatttcatacaacttttggtgacaatttcttttct 28570352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 28577893 - 28577945
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||| ||||||||||||||||||||| || ||||| |||||| |||||||||    
T  28577893 tagtggtatttgaacaaccatttcatacaacttttggtgacaatttcttttct 28577945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 42768009 - 42768068
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttc 245  Q
    ||||||||||||||||||||| ||||||||| |||||||  |||||| || |||| ||||    
T  42768009 agagtagtgatatttgaacaaacatttcatacaatttttagtgacaattttttttttttc 42768068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 14029128 - 14029186
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||| ||||||||||| | | || ||||| ||||||||| ||||||    
T  14029128 atagagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttct 14029186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 21273597 - 21273646
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||||||||    
T  21273597 tagagtagtgatatttgaacaactatttcatacaacttttg-tgacaactt 21273646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 38128418 - 38128467
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||| | | |||||||| ||||||||||||||    
T  38128418 tagtgatatttgaacaaccattttaaacaatttttg-tgacaacttctttt 38128467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 40413251 - 40413304
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| ||| || |||| |||| ||||||||||    
T  40413251 agagtagtgatatttgaacaaccatttgatacaactttt-atgataacttctttt 40413304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 41703501 - 41703443
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||| ||||||||||||||| |||||| |||||||||||| ||| || || ||||||    
T  41703501 atagaggagtgatatttgaacacccattttatataatttttggtgataattttttttct 41703443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 9963864 - 9963815
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| ||| || ||||||||| ||||| ||||    
T  9963864 agtgatatttgaacaaccattttatacaacttttgatgataacttttttt 9963815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 20473960 - 20473924
Alignment:
Q  188 agtagtgatatttgaacaaccatttcatataattttt 224  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  20473960 agtagtgatatttgaacaactatttcatataactttt 20473924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 5304712 - 5304804
Alignment:
Q  180 ttatatagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||       ||||||||||||||||||||||    
T  5304712 ttatatagagtagtgatatttgaacaaccatttcatacaatttttggtgacaactttttttctctc--ttttcattgattaaaaacaatggagag 5304804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 15062029 - 15061975
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  15062029 agagtagtgatatttgaacaaccatttcatataacttttggtgacaacttttttt 15061975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 31480023 - 31480076
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  31480023 gagtagtgatatttgaacaactatttcatacaatttttggtgacaacttttttt 31480076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 48872839 - 48872888
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  48872839 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 48872888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 2362551 - 2362497
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  2362551 gagtagtgatatttgaacaactatttgatacaatttttg-tgacaacttcttttct 2362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 8391226 - 8391273
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  8391226 tagagtagtgatatctgaacaaccatttcatacaatttttggtgacaa 8391273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 45740432 - 45740485
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||    
T  45740432 agagtagtgatatttgaacaatcatttgaaataattttt-atgacaacttctttt 45740485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 49425921 - 49425863
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||| || || ||||||    
T  49425921 atagagtagtgatatttgaacaaccatttcatacaacttttggtgataattttttttct 49425863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 4638107 - 4638063
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgaca 231  Q
    |||||||||||||||||||||||||||||| || ||||| |||||    
T  4638107 gagtagtgatatttgaacaaccatttcatacaacttttggtgaca 4638063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 51571611 - 51571556
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||| ||||||||||||||||||||| ||| || ||||| ||||||||||||||    
T  51571611 atagagttgtgatatttgaacaaccatttaatacaacttttg-tgacaacttctttt 51571556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 31703367 - 31703422
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||| |||||||| ||||||||||||| ||| |||||||| ||||||||| ||||    
T  31703367 tagaggagtgatatatgaacaaccattttatacaatttttggtgacaacttttttt 31703422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 46003628 - 46003593
Alignment:
Q  207 ccatttcatataatttttgatgacaacttcttttct 242  Q
    |||| |||||||||||||||||||||||||||||||    
T  46003628 ccatgtcatataatttttgatgacaacttcttttct 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 5367936 - 5367978
Alignment:
Q  193 tgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||| |||||||||| |||||||| |||||||||    
T  5367936 tgatatttgaacatccatttcatacaatttttggtgacaactt 5367978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 45272050 - 45272104
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttc 245  Q
    |||||||||||||||||||||||||| || ||||| ||| ||||| |||| ||||    
T  45272050 agtgatatttgaacaaccatttcatacaacttttggtgataactttttttttttc 45272104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 7503644 - 7503603
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    |||||||||||||||||||||||||| || ||||| ||||||    
T  7503644 agtgatatttgaacaaccatttcatacaacttttggtgacaa 7503603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 25859757 - 25859716
Alignment:
Q  199 ttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| ||||||| |||| |||||||    
T  25859757 ttgaacaaccatttcatataacttttgataacaatttctttt 25859716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 30631730 - 30631759
Alignment:
Q  183 tatagagtagtgatatttgaacaaccattt 212  Q
    ||||||||||||||||||||||||||||||    
T  30631730 tatagagtagtgatatttgaacaaccattt 30631759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 37843323 - 37843359
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataattt 222  Q
    |||||||||||||||||||||| |||| |||||||||    
T  37843323 agagtagtgatatttgaacaactatttgatataattt 37843359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 52020310 - 52020342
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcata 216  Q
    |||||| ||||||||||||||||||||||||||    
T  52020310 atagagcagtgatatttgaacaaccatttcata 52020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 7807238 - 7807182
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  7807238 agagtagtgatatttgaacaaccatttcatacaacttttgatgacaacttcttttct 7807182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 22330516 - 22330573
Alignment:
Q  183 tatagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  22330516 tatagagcagtgatatttgaacaaccatttcatataatttttggtgacaacttttttt 22330573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 43260174 - 43260120
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  43260174 agagtagtcatatttgaacaaccatttcatacaacttttgatgacaacttctttt 43260120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 7390669 - 7390716
Alignment:
Q  193 tgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  7390669 tgatatttgaacaaccatttcatacaatttttggtgacaacttctttt 7390716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 27778246 - 27778199
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  27778246 tagagtagtgatatttgaacaaccatttcatataacttttggtgacaa 27778199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 36990221 - 36990167
Alignment:
Q  188 agtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||||||||||||||||||||||||||||||||||  |||||| || ||||||    
T  36990221 agtagtgatatttgaacaaccatttcatataattttttgtgacaaatttttttct 36990167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 32154441 - 32154494
Alignment:
Q  189 gtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||| ||||||    
T  32154441 gtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttttct 32154494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 40717127 - 40717180
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||||| || ||||  ||||||||||||||    
T  40717127 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaacttctttt 40717180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 40842589 - 40842536
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  40842589 gagtaatgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 40842536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 19426758 - 19426709
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||| || ||||| ||||||||| ||||    
T  19426758 agtgatatttgaacaaccatttcatacaacttttggtgacaacttttttt 19426709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 28597057 - 28597004
Alignment:
Q  192 gtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttc 245  Q
    ||||||||||||||||||||||||| || ||||| |||||| ||||||| ||||    
T  28597057 gtgatatttgaacaaccatttcatacaacttttggtgacaaattcttttttttc 28597004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 44894363 - 44894415
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||| |||||| | |||||||||| ||||||||||||||    
T  44894363 gagtagtgatatttgaacatccatttgagataatttttg-tgacaacttctttt 44894415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 47424877 - 47424928
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttc 241  Q
    ||||||||||||||||||||||||||| || ||||| |||||| || |||||    
T  47424877 tagtgatatttgaacaaccatttcatacaacttttggtgacaattttttttc 47424928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 155869 - 155922
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| | | || ||||||| ||||||||||||    
T  155869 agagtagtgatatttgaacaaccattttagacaacttttgat-acaacttctttt 155922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 37351878 - 37351931
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| ||||| |||||| ||||| |||||| |||||||    
T  37351878 agagtagtgatatttgaacaatcatttgatataacttttg-tgacaatttctttt 37351931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 41966511 - 41966458
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| |||| | | ||||||| |||||||||||||||    
T  41966511 agagtagtgatatttgaacaactattttaaacaattttt-atgacaacttctttt 41966458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 43445590 - 43445537
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| ||||| ||| |||||||| |||||| |||||||    
T  43445590 agagtagtgatatttgaacaatcatttgatacaatttttg-tgacaatttctttt 43445537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 43657185 - 43657155
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcata 216  Q
    |||||||||||||||||||||||||||||||    
T  43657185 agagtagtgatatttgaacaaccatttcata 43657155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 10591334 - 10591282
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaacttttg-tgacaacttctttt 10591282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 12142066 - 12142014
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||| ||| || ||||| ||||||||| ||||    
T  12142066 gagtagtgatatttgaacaaccatttgatacaacttttg-tgacaacttttttt 12142014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 47193108 - 47193057
Alignment:
Q  188 agtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||| | |||| ||||| | ||||||||||||    
T  47193108 agtagtgatatttgaacaaccattttagataacttttggt-acaacttctttt 47193057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 36318167 - 36318222
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36318167 tagagtaatgatatttgaacaaccatttcatataatttttggtgacaacttctttt 36318222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 6126640 - 6126550
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||||||||||||||||||| || ||||| | |||||||||||| | ||       |||| |||||||||||||||||    
T  6126640 atagagtagtgatatttgaacaaccatttcatacaacttttggttacaacttcttttttctctcttttcattggttaaaaacaatggagag 6126550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 43169641 - 43169698
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||    
T  43169641 tagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactttttttct 43169698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 31997986 - 31997930
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||||||||||| | | || ||||||||||||||||||||||    
T  31997986 agagtagtgatatttgaacaaccatttgagacaacttttgatgacaacttcttttct 31997930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 44365179 - 44365235
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  44365179 agagtggtgatatttgaacaaccattttatacaatttttggtgacaacttcttttct 44365235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 51406258 - 51406317
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttc 245  Q
    |||| ||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||    
T  51406258 agagaagtgatatttgaacaactatttcatataacttttggtgacaactttttttctttc 51406317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 51650540 - 51650486
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  51650540 agagtggtgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 51650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 273
Target Start/End: Original strand, 31249214 - 31249296
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggaga 273  Q
    |||||||||||||||||||||||||| || ||||| ||||||||| |||| ||||       |||| ||||||||||||||||    
T  31249214 agtgatatttgaacaaccatttcatacaacttttggtgacaactttttttttttctcttttcattggttaaaaacaatggaga 31249296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 46003889 - 46003836
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  46003889 gagtaatgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 46003836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 108613 - 108559
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| |||||||| || ||||| ||||||||| ||||    
T  108613 agagtagtgatatttgaacaactatttcatacaacttttggtgacaacttttttt 108559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 51464154 - 51464208
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| ||| || ||||| ||||||||| ||||    
T  51464154 agagtagtgatatttgaacaaccattttatacaacttttggtgacaacttttttt 51464208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 5399098 - 5399045
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||||| ||||    
T  5399098 gagtagtgatatttgaacaaccatttcatccaacttttggtgacaacttttttt 5399045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 7293985 - 7294040
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||||| | | || ||||||| ||||||||||||    
T  7293985 atagagtagtgatatttgaacaaccattttagacaacttttgat-acaacttctttt 7294040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 41309185 - 41309129
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||| | |||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  41309185 atagaggattgatatttgaacaatcatttcatacaacttttggtgacaacttctttt 41309129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 20380777 - 20380830
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  20380777 agagtagtgatatttgaacaaccattttaaacaacttttg-tgacaacttctttt 20380830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 46473311 - 46473258
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||||||||||||    
T  46473311 agagtaatgatatttgaacaaccatttgatacaactttt-atgacaacttctttt 46473258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 49131039 - 49130982
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||| |||||||||||||||| |||||| | | |||||||| ||||||||||||||||    
T  49131039 atagactagtgatatttgaacatccatttgagacaatttttg-tgacaacttcttttct 49130982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 7231892 - 7231933
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttg 225  Q
    ||||||||||||||||||||||||||||| ||| || |||||    
T  7231892 atagagtagtgatatttgaacaaccatttgatacaacttttg 7231933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 20893131 - 20893188
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttcttt 244  Q
    |||||||||||||| ||||||||||| | | || |||||||||||||||  |||||||    
T  20893131 gagtagtgatattttaacaaccatttgagacaacttttgatgacaacttaatttcttt 20893188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 29706085 - 29706033
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| |||| ||| || ||||| ||||||||||||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaacttttg-tgacaacttctttt 29706033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 55344183 - 55344232
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    |||||||||||||||||||||| |||||||| ||  ||| ||||||||||    
T  55344183 agagtagtgatatttgaacaactatttcatacaacattttatgacaactt 55344232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 9028056 - 9028001
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||| |||||||||||||||||||||| |||  ||||||| |||||||||| |||||    
T  9028056 agagaagtgatatttgaacaaccatttgatacgatttttg-tgacaacttcgtttct 9028001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 51673047 - 51672988
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttc 245  Q
    |||||||||||||||||||||||||||| | | || ||||| | |||||||||||| ||||    
T  51673047 tagagtagtgatatttgaacaaccattttagacaacttttggt-acaacttcttttttttc 51672988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 36792516 - 36792460
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  36792516 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttct 36792460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 41951718 - 41951670
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41951718 gagtagtgatatttgaacaaccatttcatataatttttggtgacaactt 41951670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 41953008 - 41952924
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| |||| | ||       ||||||||||||||||||||||    
T  41953008 tagtgatatttgaacaaccatttcatataacttttggtgacaactttttttttctctcttttcattgattaaaaacaatggagag 41952924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 6953276 - 6953363
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||||||||||||| || || ||||| |||||||||||||||| ||       |||| |||||||||||||||||    
T  6953276 gagtagtgatatttgaacaaccatttcttacaacttttggtgacaacttcttttctctctcttttcattggttaaaaacaatggagag 6953363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 31240832 - 31240778
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  31240832 agagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 31240778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 22257082 - 22257133
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  22257082 atagagtagtgatatttgaacaaccatttcatacaacttttggtgacaactt 22257133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 48326722 - 48326668
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||||||| ||||    
T  48326722 agagtagtgatatttgatcaaccatttcatataatttttagtgacaacttttttt 48326668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 48372113 - 48372167
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| |||||||| |||||||  ||||||||||||||    
T  48372113 agagtagtgatatttgaacaactatttcatacaatttttagtgacaacttctttt 48372167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 48099995 - 48099906
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||| ||||||||||||||| || ||||| ||||||||| |||| ||||       |||| |||||||||||||||||    
T  48099995 atagagtagtgatatttaaacaaccatttcatacaacttttggtgacaactt-ttttttttctctttttattggttaaaaacaatggagag 48099906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 9567580 - 9567632
Alignment:
Q  188 agtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||    
T  9567580 agtagtgatatttgaacaaccattttatacaatttttggtgacaacttttttt 9567632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 43168604 - 43168658
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||| |||||||||||||||||||||| | |||||| ||||||||| ||||    
T  43168604 agagtagtaatatttgaacaaccatttcatacagtttttggtgacaacttttttt 43168658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 47134729 - 47134775
Alignment:
Q  189 gtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||    
T  47134729 gtagtgatatttgaacaactatttcatataatttttcgtgacaactt 47134775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 1580171 - 1580224
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||||| || ||||  ||||||||| ||||    
T  1580171 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaacttttttt 1580224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 51318879 - 51318838
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  51318879 agtgatatttaaacaaccatttcatataatttttggtgacaa 51318838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 52392113 - 52392200
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||  ||||||||||||||| || ||||| |||||||||||||| | ||       |||| |||||||||||||||||    
T  52392113 tagagtagtgatatt--aacaaccatttcatacaacttttggtgacaacttcttttttctctactttcattggttaaaaacaatggagag 52392200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 30973768 - 30973728
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataattttt 224  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  30973768 atagagtagtgatatttgaacaactatttcatacaattttt 30973728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 31275331 - 31275276
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||||| ||| || ||||| |||||| |||||||    
T  31275331 atagagtagtgatatttgaacaaccatttgatacaacttttg-tgacaatttctttt 31275276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 51038999 - 51039051
Alignment:
Q  180 ttatatagagtagtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    ||||| ||||||||||||||| ||||||||||||||| || ||||| ||||||    
T  51038999 ttataaagagtagtgatatttaaacaaccatttcatacaacttttggtgacaa 51039051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 51389500 - 51389446
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||| |||||||||||||||||||||| ||| || ||||| ||||||||||||||    
T  51389500 tagagcagtgatatttgaacaaccatttgatacaacttttg-tgacaacttctttt 51389446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 54036419 - 54036474
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||| |||||||||||||||||||||  || |||||||| ||||||||| ||||||    
T  54036419 gagtggtgatatttgaacaaccattttgtacaatttttggtgacaactttttttct 54036474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 1033331 - 1033278
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  1033331 agagtagtgatatttgaacaaccattttaaacaacttttg-tgacaacttctttt 1033278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 30778149 - 30778239
Alignment:
Q  183 tatagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||| ||||||||||||||| |||| |||||| |||| ||||||| ||||||| | ||       |||| |||||||||||||||||    
T  30778149 tatagagtaatgatatttgaacaactatttgatataactttt-atgacaatttcttttttctctctttttattggttaaaaacaatggagag 30778239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 42915107 - 42915160
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| |||| ||| || ||||| ||||||||||||||    
T  42915107 agagtagtgatatttgaacaactatttgatacaacttttg-tgacaacttctttt 42915160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 940161 - 940194
Alignment:
Q  191 agtgatatttgaacaaccatttcatataattttt 224  Q
    |||||||||||||||||||||| |||||||||||    
T  940161 agtgatatttgaacaaccattttatataattttt 940194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 15596578 - 15596526
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaacttttg-tgacaacttctttt 15596526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 42169391 - 42169436
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||||||    
T  42169391 gagtagtgatgtttgaacaaccatttaatataacttttggtgacaa 42169436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 39241190 - 39241246
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||| ||||||||||| | | || ||||| ||||||||| ||||||    
T  39241190 agagtagtgatattttaacaaccatttgagacaacttttggtgacaacttattttct 39241246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 55927167 - 55927112
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||||||||||||||||| |||||| | | |||||||| |||||| |||||||||    
T  55927167 agagtagtgatatttgaacatccatttgagacaatttttg-tgacaatttcttttct 55927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 19913976 - 19913880
Alignment:
Q  178 tattatatagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||| |||| | ||       |||| |||||||||||||||||    
T  19913976 tattatatagagtagtgatatttgaacaaccatttcatacaactttcggtgacaactttttttttctctcttttcattggttaaaaacaatggagag 19913880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 7428606 - 7428525
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||       ||||||||||||||||||||||    
T  7428606 agtgatatttgaacaaccatttcatacaatttttggtgacaactttttttctctc--ttttcattgattaaaaacaatggagag 7428525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 9202396 - 9202450
Alignment:
Q  178 tattatatagagtagtgatatttgaacaaccatttcatataatttttgatgacaa 232  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  9202396 tattagataaagtagtgatatttgaacaaccatttcatacaattttttatgacaa 9202450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 45515494 - 45515541
Alignment:
Q  193 tgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  45515494 tgatatttgaacaaccatttcatacaacttttggtgacaacttctttt 45515541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 36133157 - 36133104
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| |||||||| || ||||| ||||||||||||||    
T  36133157 agagtagtgatatttgaacaactatttcatacaacttttg-tgacaacttctttt 36133104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 34138925 - 34138978
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||||| || |||||  |||||||| ||||    
T  34138925 gagtagtgatatttgaacaaccatttcatacaacttttggcgacaacttttttt 34138978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 274
Target Start/End: Complemental strand, 12962570 - 12962482
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||||||||| |||| |||||| ||||| | |||| ||||||||| ||       |||| |||||||||||||||||    
T  12962570 tagagtagtgatatttgaacaactatttgatataaattttg-taacaatttcttttctctctcttttaattggttaaaaacaatggagag 12962482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 14714168 - 14714114
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||| |||||| | | |||||||| ||||||||||||||||    
T  14714168 gagtagtgatatttgaacatccatttgagacaatttttg-tgacaacttcttttct 14714114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 12600227 - 12600178
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||| |||||||| || ||||| ||||||||||||||    
T  12600227 tagtgatatttgaacaactatttcatacaacttttg-tgacaacttctttt 12600178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 26321585 - 26321639
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| ||||||||| || ||||| ||| ||||| ||||    
T  26321585 agagtagtgatatttgaacaatcatttcatacaacttttggtgataacttttttt 26321639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 42283139 - 42283177
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttg 225  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  42283139 gagtagtgatatttgaacaaccatttcattcaatttttg 42283177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 11164262 - 11164351
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||| |||||||||||||||| |||| ||| || ||||| |||||||||||||| | ||       |||| |||||||||||||||||    
T  11164262 atagagtggtgatatttgaacaactatttgatacaacttttg-tgacaacttcttttttctctcttttcattggttaaaaacaatggagag 11164351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 21749542 - 21749488
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  21749542 agagtagtgatatttgaacaaccattttatataatttttggtgacaatttctttt 21749488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 3141678 - 3141625
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||| ||||    
T  3141678 gagtagtgatatttgaacaaccatttcatacaacttttgatgacaacttttttt 3141625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 40223674 - 40223730
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttcttt 244  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||    
T  40223674 gagtagtgatatttgaacaaccatttcatacaatttttggtgacaactt-ttttcttt 40223730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 5130265 - 5130353
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||| |||||||| |||||||  |||||||||||||| | ||       |||| |||||||||||||||||    
T  5130265 agagtagtgatatttgaacaactatttcatacaattttttgtgacaacttcttttttctctcttttcattggttaaaaacaatggagag 5130353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 3634675 - 3634628
Alignment:
Q  188 agtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||    
T  3634675 agtagtgatatttgaacaaccattacatacaacttttgatgacaactt 3634628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 14206568 - 14206485
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||||||| |||||||| |||||  || |||||| ||       |||| |||||||||||||||||    
T  14206568 agtgatatttgaacaaccatttcatacaatttttggtgacagttttttttctctctcttttcattggttaaaaacaatggagag 14206485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 31284287 - 31284369
Alignment:
Q  191 agtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||||||| || |||||  ||||||||||||||| ||       |||| |||||||||||||||||    
T  31284287 agtgatatttgaacaaccatttcatacaacttttg-cgacaacttcttttctctctcttttcattggttaaaaacaatggagag 31284369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 10232682 - 10232629
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| |||| ||| || ||||| ||||||||||||||    
T  10232682 gagtagtgatatttgaacaactattttatacaacttttggtgacaacttctttt 10232629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 12661835 - 12661888
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||| |||||||||||||||| |||||||| || ||||| ||||||||||||||    
T  12661835 gagtggtgatatttgaacaactatttcatacaacttttggtgacaacttctttt 12661888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 16202903 - 16202850
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||| ||||||||| || ||||  ||||||||||||||    
T  16202903 gagtagtgatatttgaacaatcatttcatacaacttttagtgacaacttctttt 16202850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 34381189 - 34381146
Alignment:
Q  192 gtgatatttgaacaaccatttcatataatttttgatgacaacttc 236  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  34381189 gtgatatttgaacaaccatttgatataatttttg-tgacaacttc 34381146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 2117528 - 2117615
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||| |||| ||| || ||||| |||||||||||||| | ||       |||| |||||||||||||||||    
T  2117528 agagtagtgatatttgaacaactatttgatacaacttttg-tgacaacttcttttttctcttttttcattggttaaaaacaatggagag 2117615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 11306880 - 11306826
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||| |||| ||| || |||||| |||||||||||||    
T  11306880 tagagtagtgatatttgaacaactatttgatacaacttttga-gacaacttctttt 11306826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 12718269 - 12718323
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    ||||||||||||||||||||||||||   | |||||||| ||||||||||||||||    
T  12718269 gagtagtgatatttgaacaaccattttcaacaatttttg-tgacaacttcttttct 12718323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 13613855 - 13613939
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    ||||||||||||||||| ||||||||| || ||||| |||||| ||||||| | ||       |||| |||||||||||||||||    
T  13613855 tagtgatatttgaacaatcatttcatacaacttttggtgacaatttcttttttctctcttttcattggttaaaaacaatggagag 13613939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 42532296 - 42532261
Alignment:
Q  190 tagtgatatttgaacaaccatttcatataatttttg 225  Q
    |||||||||||||||||| |||||||||||||||||    
T  42532296 tagtgatatttgaacaactatttcatataatttttg 42532261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 6515327 - 6515357
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcata 216  Q
    |||||||||||||||||||||||||||||||    
T  6515327 agagtagtgatatttgaacaaccatttcata 6515357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 9403696 - 9403643
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||| ||||||||||| ||| || ||||| ||||||||||||||    
T  9403696 agagtagtgatatttaaacaaccatttgatacaacttttg-tgacaacttctttt 9403643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 14914553 - 14914505
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    |||||||||||||||| ||| |||||||||||||  ||||||||||||||    
T  14914553 agagtagtgatatttgtacatccatttcatataa-ctttgatgacaactt 14914505  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 29227889 - 29227840
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    |||| |||||||||| |||||| |||| |||||||||||| |||||||||    
T  29227889 agagcagtgatatttaaacaactattttatataatttttggtgacaactt 29227840  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 39595456 - 39595404
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||| |||||||||||||||||||| ||| || ||||| ||||||||||||||    
T  39595456 gagtaatgatatttgaacaaccatttgatacaacttttg-tgacaacttctttt 39595404  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 125273 - 125222
Alignment:
Q  188 agtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||| ||| || |||||  |||||||||||||    
T  125273 agtagtgatatttgaacaaccatttgatacaacttttg-cgacaacttctttt 125222  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 20719903 - 20719958
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttct 242  Q
    |||||||||||||||||||| |||||| | | || ||||| ||||||||||||||||    
T  20719903 agagtagtgatatttgaacatccatttgagacaacttttg-tgacaacttcttttct 20719958  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 24437627 - 24437572
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttc 241  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||| |||||    
T  24437627 agagtaattatatttgaacaaccatttgatataatttttgatgacaactttttttc 24437572  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 10521306 - 10521252
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||| |||| |||||||||||| ||| ||||| ||||    
T  10521306 agagtagtgatatttgaacaactattttatataatttttggtgataacttttttt 10521252  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 25166808 - 25166759
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaactt 235  Q
    ||||||||||||||| ||||||||||||||| |||||||  |||||||||    
T  25166808 agagtagtgatatttaaacaaccatttcatacaattttttgtgacaactt 25166759  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 32853033 - 32853085
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||||||||||||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaatttttg-tgacaacttctttt 32853085  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 9954732 - 9954680
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctt 238  Q
    |||| |||||||||||||||||||||| ||| || ||||| ||||||||||||    
T  9954732 agaggagtgatatttgaacaaccatttaatacaacttttggtgacaacttctt 9954680  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 26378272 - 26378326
Alignment:
Q  185 tagagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    |||||||||||||||||||||||||||| | | || ||||||| ||||||||||||    
T  26378272 tagagtagtgatatttgaacaaccattttagacaacttttgat-acaacttctttt 26378326  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 28548908 - 28548996
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||| || ||||||||||||||||| ||| || ||||| ||||||||| |||| ||||       |||| |||||||||||||||||    
T  28548908 agagtaatgttatttgaacaaccattttatacaacttttggtgacaactttttttttttctcttttcattggttaaaaacaatggagag 28548996  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 1434562 - 1434602
Alignment:
Q  184 atagagtagtgatatttgaacaaccatttcatataattttt 224  Q
    |||||||||||||||||||||||| |||| ||| |||||||    
T  1434562 atagagtagtgatatttgaacaactatttgatacaattttt 1434602  T

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Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 27523 - 27469
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttctttt 240  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  27523 agagtagtgatatttgaacaaccatttcatacaatttttagtgacaatttctttt 27469  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 396045 - 395988
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctt 243  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||| || |||||||    
T  396045 agagtagtgatatttgaacaaccatttcatacaattttttgtgacaattttttttctt 395988  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 36185 - 36126
Alignment:
Q  186 agagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttc 245  Q
    ||||||||||||||||||||||||||| ||| || ||||  ||||||||| |||| ||||    
T  36185 agagtagtgatatttgaacaaccatttgatacaactttttgtgacaacttgttttttttc 36126  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 6999 - 6913
Alignment:
Q  187 gagtagtgatatttgaacaaccatttcatataatttttgatgacaacttcttttctttcnnnnnnnattgattaaaaacaatggagag 274  Q
    |||||||||||||||||||||||||| ||| || |||||  |||||||| |||||| ||       |||| |||||||||||||||||    
T  6999 gagtagtgatatttgaacaaccattttatacaacttttggcgacaactt-ttttctctctcttttcattggttaaaaacaatggagag 6913  T

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