View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_low_3 (Length: 481)
Name: NF16194_low_3
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 44006371 - 44006837
Alignment:
| Q |
1 |
tcaagaaaaagtaatcaattgatgtgtgataactcttcattagtaaaa--gtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006371 |
tcaagaaaaagtaatcaattgatgtgtgataactcttcattagtaaaaaagtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtat |
44006470 |
T |
|
| Q |
99 |
taccgatttaggnnnnnnnnnn--gacattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgct |
196 |
Q |
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|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006471 |
taccgatttaggttttttttttttggcattcatcaaagtagtattaatatatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgct |
44006570 |
T |
|
| Q |
197 |
ctagctagaagatgagcaacattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtac |
296 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006571 |
ctagctag--------caacattgttggtttgtctccgaataaaacctctccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtac |
44006662 |
T |
|
| Q |
297 |
tatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataagc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006663 |
tatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataagc |
44006762 |
T |
|
| Q |
397 |
cacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
471 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006763 |
cacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
44006837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 123 - 395
Target Start/End: Complemental strand, 24152715 - 24152445
Alignment:
| Q |
123 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
222 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |
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| T |
24152715 |
cattcatcaaagtagtagtaatacatggaggaatataatcaaagacttggcaactagcataagacaatgc--gactagctagaaggtgaacaatattgtt |
24152618 |
T |
|
| Q |
223 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
321 |
Q |
| |
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||||| ||||||| ||||| ||||| |||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24152617 |
tgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactatgttgtatgacttggt |
24152518 |
T |
|
| Q |
322 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
395 |
Q |
| |
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| T |
24152517 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 123 - 420
Target Start/End: Complemental strand, 24147276 - 24146980
Alignment:
| Q |
123 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
222 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| || |||| || | ||||||||||| |||||||||||||| |
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| T |
24147276 |
cattaatcaaagtagtagtaatacatggaggtatataatcagagacttggcaactagcacaagacaacgc--cactagctagaaggtgagcaacattgtt |
24147179 |
T |
|
| Q |
223 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
321 |
Q |
| |
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||||| ||||||| ||||| ||||| ||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24147178 |
tgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactttgttgtatgacttggt |
24147079 |
T |
|
| Q |
322 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagcttgctttaaaccc |
420 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |||| || ||||||||||| |||| |
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|
| T |
24147078 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagcttgctttagaccc |
24146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 43228140 - 43227988
Alignment:
| Q |
123 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
222 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||||| |||| ||| || |
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| T |
43228140 |
cattcatcaaggtagtaataatatatggaggaatataatcaaaaacttaagaaatagtacaagacaatgtcatactagatagaagatatgcaatattatt |
43228041 |
T |
|
| Q |
223 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattg |
275 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
43228040 |
ggtttatctccgtgtaaaatttatccgaaagtttggtatagaatacaagattg |
43227988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 35379011 - 35379060
Alignment:
| Q |
216 |
cattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaa |
265 |
Q |
| |
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||||||||| || ||| ||||||||||||| || |||||||||||||||| |
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|
| T |
35379011 |
cattgttggcttaccttcgaataaaacctaacctaaagtttggtaaagaa |
35379060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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