View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16194_low_4 (Length: 458)
Name: NF16194_low_4
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 2608245 - 2608675
Alignment:
| Q |
17 |
atcatcacttacacacttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608245 |
atcatcacttacacacttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatttatcc |
2608344 |
T |
|
| Q |
117 |
ccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgttgcaaattcaagcctat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2608345 |
ccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgtagcaaattcaagcctat |
2608444 |
T |
|
| Q |
217 |
ccgcaagaggtacactaaattctctccaacaattattcccaacatcaaatcccatcacattatatgccctagccgaggtaatccaatacaacgttgttgt |
316 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
2608445 |
ctgcaagaggcacactaaattccctccaacaattattcccaacatcaaatcccattacactatatgccctagctgaggttatccaatacaatgttgttgt |
2608544 |
T |
|
| Q |
317 |
tcttcttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaata |
416 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2608545 |
tcttgttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgtcaata |
2608644 |
T |
|
| Q |
417 |
caagattcatatatttcaacggtcggttcat |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2608645 |
caagattcatatatttcaacggtcggttcat |
2608675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University