View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_low_5 (Length: 440)
Name: NF16194_low_5
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 192 - 424
Target Start/End: Complemental strand, 43543860 - 43543637
Alignment:
| Q |
192 |
gaaggattgatttatgtaaaagtaaaacatagccaatatccatgacaacaatacatacatgtctgaaaatgagaaaa--gacataccagaagtgaccaac |
289 |
Q |
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| T |
43543860 |
gaaggattgatttatgtaaaagtaaa-catagacaatatccatgacaacaataaat----gtatgaaaatgagaaaaaagacataccagaagtgaccaac |
43543766 |
T |
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| Q |
290 |
gggaccaacaaaaccaactccaaacatactagtaacagcaacacgtctccaatcgatgaaaaatttatcatctgctgctttctgcaaatataaatataaa |
389 |
Q |
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| T |
43543765 |
aggaccaacaaaaccaactccaaacatactagtaacagcaacacgtctccaatcgatgacaaatttatcatctgctgctttctgcaaatataa------a |
43543672 |
T |
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| Q |
390 |
tattattataattttaggtagttacagagagagag |
424 |
Q |
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| T |
43543671 |
tattattataattttaggtagttacagagagagag |
43543637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 48842769 - 48842688
Alignment:
| Q |
284 |
accaacgggaccaacaaaaccaactccaaacatactagtaacagcaacacgtctccaatcgatgaaaaatttatcatctgct |
365 |
Q |
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|||||| || ||||||| |||||||| ||||| ||| |||||||| ||||||||| ||||||| | ||||||||||| |||| |
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| T |
48842769 |
accaaccggtccaacaataccaactcaaaacacacttgtaacagccacacgtctctaatcgatcacaaatttatcatatgct |
48842688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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