View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_low_7 (Length: 344)
Name: NF16194_low_7
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_7 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 339
Target Start/End: Complemental strand, 13887816 - 13887508
Alignment:
| Q |
23 |
ggcacaacacattcatgggtatttcctttcatgataaagtctttgttcaagaatttctccccggttccatccaggtgaccctgtacgaaatgcccaccca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887816 |
ggcacaacacattcatgggtatttcctttcatgataaagtctttgttcaagaatttctccccggttccatccaggtgaccctgtacgaaatgcccaccca |
13887717 |
T |
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| Q |
123 |
ttctactcatcggtgtttcttacctttcaagattaaccgccgatcctggttccagttcaaccagtaaagtcttcctcagtgtcgaattttgtcacggtga |
222 |
Q |
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| T |
13887716 |
ttctactcatcggtgtttcttacctttcaagattaaccggcgatcctggttctagttcaaccagtaaagtcttcctcagtgtcgaattttgtcacg---- |
13887621 |
T |
|
| Q |
223 |
aacacgtaccattgacaagtggcggagccaggatttatatagagcctaggtgnnnnnnngaattggaaccgtaattttccactacctcattattaggtct |
322 |
Q |
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| T |
13887620 |
---acgtaccattgacaagtggcggagccaggatttatatagagcctaggtgaaaaaaa-aattggaaccgtaattttccactacctcattattaggtct |
13887525 |
T |
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| Q |
323 |
caccaccctatgctact |
339 |
Q |
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||||||| ||||||||| |
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| T |
13887524 |
caccaccttatgctact |
13887508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 13929085 - 13929197
Alignment:
| Q |
40 |
ggtatttcctttcatgataaagtctttgttcaagaatttctccccggttccatccaggtgaccctgtacgaaatgcccacccattctactcatcggtgtt |
139 |
Q |
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| T |
13929085 |
ggtatttgctttcatgata--gtctttgtttaagaatttctcccccgtgccatccatgtgaccctgtacgaaatgtccacccgtttgactaatctgtgtt |
13929182 |
T |
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| Q |
140 |
tcttacctttcaaga |
154 |
Q |
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||| |||||||||| |
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| T |
13929183 |
acttccctttcaaga |
13929197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 14043275 - 14043387
Alignment:
| Q |
40 |
ggtatttcctttcatgataaagtctttgttcaagaatttctccccggttccatccaggtgaccctgtacgaaatgcccacccattctactcatcggtgtt |
139 |
Q |
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||||||| ||||||||||| ||||||||| |||||||||||||| || ||||||| |||||||||||||||||| |||||| || ||| | ||||||| |
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| T |
14043275 |
ggtatttgctttcatgata--gtctttgtttaagaatttctcccccgtgccatccatgtgaccctgtacgaaatgtccacccgtttgactaaccggtgtt |
14043372 |
T |
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| Q |
140 |
tcttacctttcaaga |
154 |
Q |
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||| |||||||||| |
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| T |
14043373 |
acttccctttcaaga |
14043387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 89614 - 89487
Alignment:
| Q |
78 |
tctccccggttccatccaggtgaccctgtacgaaatgcccacccattctactcatcggtgtttcttacctttcaagattaaccgccgatcctggttccag |
177 |
Q |
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||||||| || ||||||| ||||||||||||||||||||||||||||| | | | ||||||| || | ||||||||||| || | |||||| ||||||| |
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| T |
89614 |
tctcccccgtgccatccacgtgaccctgtacgaaatgcccacccattcgagtaaccggtgttactgatctttcaagattcactggcgatcccggttccaa |
89515 |
T |
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| Q |
178 |
ttcaaccagtaaagtcttcctcagtgtc |
205 |
Q |
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||||| ||| |||||||||| |||||| |
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| T |
89514 |
ttcaatcagagaagtcttccttagtgtc |
89487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 12000784 - 12000752
Alignment:
| Q |
240 |
agtggcggagccaggatttatatagagcctagg |
272 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
12000784 |
agtggcggagccaggaattatatagagcctagg |
12000752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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