View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16194_low_9 (Length: 334)
Name: NF16194_low_9
Description: NF16194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16194_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 44006389 - 44006078
Alignment:
| Q |
1 |
attgattactttttcttgattgataattggctactataaacatggttattggttaaataattttttccgtaatgacataatcatcatgttactttagaca |
100 |
Q |
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| T |
44006389 |
attgattactttttcttgattgataattggctactataaacatggttattggttaaataattttttccgtaatgacataatcatcatgttactttagaca |
44006290 |
T |
|
| Q |
101 |
ggacaattgatcactttcataataacatttggttgtagnnnnnnncaaagaaaaacatccgattactatagacannnnnnnnnnnnngaattagcaaaat |
200 |
Q |
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| T |
44006289 |
ggacaattgatcactttcataataacatttggttgtagtttttttcaaagaaaaacatccgattactatagaca-tattttttttttgaattagcaaaat |
44006191 |
T |
|
| Q |
201 |
ttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaacaagaaaaataacagcagcagctgagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44006190 |
ttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagaga---aacaagaaaaataacagcagcagctgagc |
44006094 |
T |
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| Q |
301 |
taacacagtaataatt |
316 |
Q |
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|||||||||||||||| |
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| T |
44006093 |
taacacagtaataatt |
44006078 |
T |
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