View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16195_high_1 (Length: 540)
Name: NF16195_high_1
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16195_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 12706958 - 12706438
Alignment:
| Q |
1 |
taacactcatttgtgccttgacccagactataatagtttcccccaagttattaattaagggtgttaagtgatagttttcgttcagagctttcgagtgcga |
100 |
Q |
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| T |
12706958 |
taacactcatttgtgcctggacccagactataatagtttcccccaagttattaattaagggagttaagtgatagttttcgtccagagctttcgagtgcaa |
12706859 |
T |
|
| Q |
101 |
agtctaacctctttagtcgagctaaatggcattccagtcctgaagccttcagacctatgtgctaagagtaattagcataagattcgacctttaggaggct |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12706858 |
agtctaacctctttaatcgagctaaatggcattccagtcctgaagccttcagacctatgtgctaagagtaattagcataagattcgacctttaggaggct |
12706759 |
T |
|
| Q |
201 |
caagtgagattgacttttgtgatgagtgatggttcgtttagaagcccataagggatcgacttgtgtgtatatcggtcttcgccttgcaggtatcgcttgc |
300 |
Q |
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| T |
12706758 |
caagtgagattgacttttgtgatgagtaatggttcgtttagaagcccataagggatcgacttgtgtgtatatcggtcttcgccttgcaggtatcgcttgc |
12706659 |
T |
|
| Q |
301 |
tttgatgagctatgtcctgctcccatttctccggatgtggttatatcgatcgcatttgctccttgttatggtctaatcaaacgatcattatatcaaattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12706658 |
tttgatgagctatgtcctgctcccatttctccggatgtggttat----atcgcatttgctccttgttgtggtctaatcaaacgatcattatatcaaattg |
12706563 |
T |
|
| Q |
401 |
gggacgcaaatgaggcctggacatatgattcttcatttgtagtctttaactagcgtggctgcaatacttatgttggattttttaaattcgttacctgaag |
500 |
Q |
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| T |
12706562 |
gggacgcaaatgaggcctggacatatgattcttcatttgtagtctttaactagcgtggctgcaatacttatgttggattttttgaattcgttacctgaat |
12706463 |
T |
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| Q |
501 |
tttgaagcttgggtcatggaagaat |
525 |
Q |
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| T |
12706462 |
tttgaagcttgggtcatggaagaat |
12706438 |
T |
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