View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16195_high_7 (Length: 262)

Name: NF16195_high_7
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16195_high_7
NF16195_high_7
[»] chr4 (9 HSPs)
chr4 (1-253)||(4121668-4121920)
chr4 (81-165)||(18151792-18151876)
chr4 (1-78)||(4347133-4347210)
chr4 (15-70)||(4131534-4131589)
chr4 (9-78)||(4363559-4363628)
chr4 (11-78)||(4118695-4118762)
chr4 (165-215)||(4337985-4338035)
chr4 (164-216)||(4118763-4118815)
chr4 (168-208)||(4363514-4363554)
[»] chr3 (2 HSPs)
chr3 (81-165)||(28372514-28372598)
chr3 (81-165)||(28380336-28380420)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4121668 - 4121920
Alignment:
Q  1 cctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgatgtc 100  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4121668 cctacattagccaacaaaaccaaaatccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgacgtc 4121767  T
Q  101 ttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatattggcacaccaatgaaaaatatgcatgctaaacaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4121768 ttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatattggcataccaatgaaaaatatgcatgctaaacaaaa 4121867  T
Q  201 taattcttcattcttacttcttagatattataacatgatactgcagttcttct 253  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4121868 taattcttcattcttacttcttagatagtataacatgatactgcagttcttct 4121920  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 18151876 - 18151792
Alignment:
Q  81 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18151876 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 18151792  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4347210 - 4347133
Alignment:
Q  1 cctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 78  Q
    |||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  4347210 cctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatc 4347133  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 4131534 - 4131589
Alignment:
Q  15 caaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatg 70  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4131534 caaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatg 4131589  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 4363628 - 4363559
Alignment:
Q  9 agccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 78  Q
    ||||| |||||||||||  ||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  4363628 agccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctcaatgcaagcatc 4363559  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 4118695 - 4118762
Alignment:
Q  11 ccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc 78  Q
    |||||||||| |||||||| |||| ||||||||||| ||||||| |||||| ||| ||||||||||||    
T  4118695 ccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcatc 4118762  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 4338035 - 4337985
Alignment:
Q  165 tggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattctt 215  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  4338035 tggcacaccgataaaaaatatgcatgttaaacaaaataattcttcattctt 4337985  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 4118763 - 4118815
Alignment:
Q  164 ttggcacaccaatgaaaaatatgcatgctaaacaaaataattcttcattctta 216  Q
    |||||||| |||| |||||||||||||||||| ||||||| | ||||||||||    
T  4118763 ttggcacatcaataaaaaatatgcatgctaaataaaataacttttcattctta 4118815  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 4363554 - 4363514
Alignment:
Q  168 cacaccaatgaaaaatatgcatgctaaacaaaataattctt 208  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  4363554 cacaccaatgaaaaagatgcatgctaaacaaaatagttctt 4363514  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 28372514 - 28372598
Alignment:
Q  81 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28372514 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 28372598  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 28380336 - 28380420
Alignment:
Q  81 ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgagaatatt 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28380336 ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgaggatatt 28380420  T

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