View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16195_low_1 (Length: 605)
Name: NF16195_low_1
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16195_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 293 - 598
Target Start/End: Original strand, 45424655 - 45424980
Alignment:
| Q |
293 |
gtacaagaattactcacaaacttcctcatgtaccaggtatcatcatcatattctacatat--------------------atattcatgttcatttcttt |
372 |
Q |
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| T |
45424655 |
gtacaagaattactcacaaacttcctcatgtaccaggtatcatcctcatattgtacatatatatatatatatatatatatatattcatgttcatttcttt |
45424754 |
T |
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| Q |
373 |
gtataattaattgtttaatgaaactggttttgtgcagcggttccaggtttaccatttattggaaatcttcttcaacttaaagagaagaaacctcacaaaa |
472 |
Q |
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| T |
45424755 |
gtataataaattgtttaatgaaactggttttgtgcagcggttccaggtttaccattgattggaaatcttcttcaacttaaagagaagaaacctcacaaaa |
45424854 |
T |
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| Q |
473 |
cattcacaaagatggctcacaaatatggacctattttttccatcaaagctggtgcttctaccatcattgttctcaacactgctcaacttgccaaacaggt |
572 |
Q |
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| T |
45424855 |
cattcacaaagatggctcacaaatatggacctattttttccatcaaagctggtgcttctaccatcattgttctcaacactgctcaacttgccaaacaggt |
45424954 |
T |
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| Q |
573 |
tctttacattctaattcattcatttc |
598 |
Q |
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| T |
45424955 |
tctttacattctaattcattcatttc |
45424980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 45424386 - 45424596
Alignment:
| Q |
19 |
tatgtattcaaatatttaattctttgaatttggatggattgtctt--gataatcttatatggaatctgtttatctatccaaaaaagaatatatacaatac |
116 |
Q |
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| T |
45424386 |
tatgtaatcaaatatttaattctttgaatgtggatggattgtcttttgataatcatatatggaatctgtttagctatccaaaaaagaatat-----atac |
45424480 |
T |
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| Q |
117 |
aatacaaacaaacaacctatttcagacaaatattctcttt-ccttacaatatacataaagatagagcggtggtggtggtcattattcaacaacaaccagc |
215 |
Q |
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| T |
45424481 |
aatacaaacaaacaacctatttcagacaaatattctctttcccttacaatatacataaagattgagcggtggtggtg---attattcaacaacaaccagc |
45424577 |
T |
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| Q |
216 |
catggacactctccagaca |
234 |
Q |
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| T |
45424578 |
catggacactctccagaca |
45424596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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