View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16195_low_11 (Length: 211)

Name: NF16195_low_11
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16195_low_11
NF16195_low_11
[»] chr2 (2 HSPs)
chr2 (17-116)||(17564276-17564375)
chr2 (119-191)||(17542033-17542105)
[»] chr8 (1 HSPs)
chr8 (144-189)||(24494210-24494255)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 17564375 - 17564276
Alignment:
Q  17 agcaacaatccctcatttgttttaacttgttcaatcaaagtctcctcatgttgtttctgcattttcttttcaagttcttcatgcttcctaaaagtctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17564375 agcaacaatccctcatttgttttaacttgttcaatcaaagtctcctcatgttgtttctgcattttcttttcaagttcttcatgcttcctaaaagtctatt 17564276  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 17542033 - 17542105
Alignment:
Q  119 tgttgctcttgcatcttcttctctaaagcttctagctttctgatgagctcaacttgaatctcattatgcctat 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17542033 tgttgctcttgcatcttcttctctaaagcttctagctttctgatgagctcaacttgaatctcattatgcctat 17542105  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 24494255 - 24494210
Alignment:
Q  144 aagcttctagctttctgatgagctcaacttgaatctcattatgcct 189  Q
    |||||||| |||||||||| | |||| |||||||||||||||||||    
T  24494255 aagcttcttgctttctgataatctcagcttgaatctcattatgcct 24494210  T

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