View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16195_low_4 (Length: 448)
Name: NF16195_low_4
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16195_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 6472067 - 6471779
Alignment:
| Q |
7 |
gtgagaagaatttggaggggtcaggaagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgttaggcattgcagctgataggat |
106 |
Q |
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| T |
6472067 |
gtgagaagaatttggaggggtcagggagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgttaggcattgcagctgataggat |
6471968 |
T |
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| Q |
107 |
aatgatgaatgtcttaattattattgtggttttatagttttttaaggtatgtggtgagtgcaatttgtgtgttagattcttagtattttcagcattggat |
206 |
Q |
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| T |
6471967 |
aatgatgaatgtcttaattatgattgtggttttatagttttttaaggtatgtggtgagtgcaatttttgtgttagattcttagtattttcagcattagat |
6471868 |
T |
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| Q |
207 |
actactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaacctacccttt |
295 |
Q |
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| T |
6471867 |
actactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacatcaatgacaattaacctacccttt |
6471779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 6471608 - 6471510
Alignment:
| Q |
292 |
ctttgcactcacgattgataagggcacatgatcgatgttagattaatataaacaagaa-aaaacaaatatgatttgagttttgaggcacgtacatatat |
389 |
Q |
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| T |
6471608 |
ctttgcactcacgattgataagggcatatgatcaatgttagattaatataaacaagaaaaaaacaaatatgatttgagttttgaggcacgtacatatat |
6471510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 13035011 - 13034930
Alignment:
| Q |
204 |
gatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaa |
285 |
Q |
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| T |
13035011 |
gatacaactcaatcttaggcaagttttacggtacacgataggctaatacttaaaaatttctcaaaacaccaatgacaattaa |
13034930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 6529352 - 6529386
Alignment:
| Q |
9 |
gagaagaatttggaggggtcaggaagaacagtgga |
43 |
Q |
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| T |
6529352 |
gagaagaatttggaggggtcaggaaggacagtgga |
6529386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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