View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16195_low_7 (Length: 362)

Name: NF16195_low_7
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16195_low_7
NF16195_low_7
[»] chr4 (1 HSPs)
chr4 (13-347)||(11141276-11141610)
[»] chr1 (1 HSPs)
chr1 (13-299)||(46711742-46712028)
[»] chr7 (1 HSPs)
chr7 (13-43)||(28334860-28334890)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 11141610 - 11141276
Alignment:
Q  13 aatatgggaagcattcctaaactgtgaaattaagcgagattgaagctcatcccactgattcatttcttccctaactttattgaattttgactgaaacttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11141610 aatatgggaagcattcctaaactgtgaaattaagcgagattgaagctcatcccactgattcatttcttccctaactttattgaattttgactgaaacttt 11141511  T
Q  113 ttcaccatcatttccattttcaaggccttaaaaaccaatcagatgccagcaacaagcctcagatcttatacataggaaaaagtaattatttgttatagct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  11141510 ttcaccatcatttccattttcaaggccttaaaaaccaatcagatgccagcaacaagcctcagatgttatacataggaaaaagtaattattagttatagct 11141411  T
Q  213 acagacatgttctttttcaaagttcctgaagaaacatcataaagaactgagacagttttggtaaacagaatgcagaaagtcagcagtagcaaagacaaat 312  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11141410 acagacatgttttttttcaaagttcctgaacaaacatcataaagaactgagacggttttggtaaacagaatgcagaaagtcagcagtagcaaagacaaat 11141311  T
Q  313 aaaccatatgatttttgaaaacgacctgtcaaacc 347  Q
    ||||||||||| |||||||||||||||||||||||    
T  11141310 aaaccatatgaattttgaaaacgacctgtcaaacc 11141276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 46711742 - 46712028
Alignment:
Q  13 aatatgggaagcattcctaaactgtgaaattaagcgagattgaagctcatcccactgattcatttcttccctaactttattgaattttgactgaaacttt 112  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||   ||||||||||||||| |||    
T  46711742 aatatgagaagcattcctaaactgtgaaattaaacaagattgaagctcatcccaccgattcatttcttccttaacttttcggaattttgactgaaatttt 46711841  T
Q  113 ttcaccatcatttccattttcaaggccttaaa-aaccaatcagatgccagcaacaagcctcagatcttatacataggaaaaagtaattatttgttatagc 211  Q
    |||||||||| |||||||||||| |||| |||  |||| ||||||  ||||||||||| || ||||||||| |   ||||||||||||||  |||| |||    
T  46711842 ttcaccatcacttccattttcaacgcctaaaacgaccagtcagattgcagcaacaagcttcggatcttatagacgtgaaaaagtaattatcagttacagc 46711941  T
Q  212 tacagacatgttctttttcaaagttcctgaagaaacatcataaagaactgagacagttttggtaaacagaatgcagaaagtcagcagt 299  Q
    || ||||||| | |||||||   ||||||||  ||||| |||   |||| |||  |||||| |||| |||||||| |||| |||||||    
T  46711942 tatagacatggt-tttttcactattcctgaaccaacattatacgtaactaagatggttttgataaatagaatgcaaaaagccagcagt 46712028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 28334860 - 28334890
Alignment:
Q  13 aatatgggaagcattcctaaactgtgaaatt 43  Q
    |||||||||||||||||||||||||||||||    
T  28334860 aatatgggaagcattcctaaactgtgaaatt 28334890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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