View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16195_low_8 (Length: 361)

Name: NF16195_low_8
Description: NF16195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16195_low_8
NF16195_low_8
[»] chr5 (3 HSPs)
chr5 (18-303)||(14902731-14903026)
chr5 (308-340)||(17797341-17797373)
chr5 (310-340)||(17793045-17793075)
[»] chr6 (2 HSPs)
chr6 (308-340)||(7033623-7033655)
chr6 (308-340)||(7037923-7037955)
[»] chr4 (2 HSPs)
chr4 (308-340)||(1540921-1540953)
chr4 (308-340)||(1545219-1545251)
[»] chr1 (3 HSPs)
chr1 (308-340)||(26404852-26404884)
chr1 (310-340)||(26400556-26400586)
chr1 (310-340)||(28914199-28914229)
[»] chr7 (1 HSPs)
chr7 (308-340)||(30506096-30506128)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 14903026 - 14902731
Alignment:
Q  18 atgaattatagcctctaacccgatttttgttccagtcacaggcttaccaaacagcttaaatgaatatttttagagcatagaattgaaaaatatatacatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14903026 atgaattatagcctctaacccgatttttgttccagtcacaggcttaccaaacagcttaaatgaatatttttagtgcatagaattgaaaaatatatacatg 14902927  T
Q  118 tttaagaacagttcgtagtgtacactatctaaattttatcatctgaagagcgcacatgtttataagacagtggcaaacaaacacagactactgtgaacct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14902926 tttaagaacagttcgtagtgtacactatctaaattttatcatctgaagagagcacatgtttataagacagtggcaaacaaacacagactactgtgaacct 14902827  T
Q  218 ta--------tcatt--aaacgagtttgattatattatttcaaaaaatgtaaccaatattttataaacggacataattttacattaactcacattc 303  Q
    ||         ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14902826 tagtttaagtccatttaaaacgagtttgattatattatttcaaaaaatgtaaccaatattttataaacggacataattttacattaactcacattc 14902731  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 17797341 - 17797373
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||||    
T  17797341 agtgttaactattgtgtttagaactgctgccac 17797373  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 340
Target Start/End: Original strand, 17793045 - 17793075
Alignment:
Q  310 tgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||    
T  17793045 tgttaactattgtgtttagaactgctgccac 17793075  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 7033623 - 7033655
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||||    
T  7033623 agtgttaactattgtgtttagaactgctgccac 7033655  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 7037923 - 7037955
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||||    
T  7037923 agtgttaactattgtgtttagaactgctgccac 7037955  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 1540921 - 1540953
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||||    
T  1540921 agtgttaactattgtgtttagaactgctgccac 1540953  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 1545219 - 1545251
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||||    
T  1545219 agtgttaactattgtgtttagaactgctgccac 1545251  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 26404852 - 26404884
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||||    
T  26404852 agtgttaactattgtgtttagaactgctgccac 26404884  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 340
Target Start/End: Original strand, 26400556 - 26400586
Alignment:
Q  310 tgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||    
T  26400556 tgttaactattgtgtttagaactgctgccac 26400586  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 340
Target Start/End: Original strand, 28914199 - 28914229
Alignment:
Q  310 tgttaactattgtgtttagaactgctgccac 340  Q
    |||||||||||||||||||||||||||||||    
T  28914199 tgttaactattgtgtttagaactgctgccac 28914229  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 30506128 - 30506096
Alignment:
Q  308 agtgttaactattgtgtttagaactgctgccac 340  Q
    ||||||| |||||||||||||||||||||||||    
T  30506128 agtgttagctattgtgtttagaactgctgccac 30506096  T

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