View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16196_high_12 (Length: 282)
Name: NF16196_high_12
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 42692071 - 42692323
Alignment:
| Q |
16 |
atgattgcgtatcgtatcatcatcacaacctgcgggatactcatttctcttggagtaattcataaatgtccttgtcaatttgctttcacatgcctgcgta |
115 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42692071 |
atgaatgcgtagcgtatcatcatcacaacctgcgggatactcatttctcttggagtgattcataaatgtccttgtcaatttgctttcacatgcctgcgta |
42692170 |
T |
|
| Q |
116 |
agagtcgatgataaatgtttacaaaaaataaagaagaaggatccatttaaaaaatatattaatagttgaattagtgatttatagtattaaacttgatcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42692171 |
agagtcgatgataaatgtttacaaaaaataaagaagaaggatccatttaaaaaatatattaatagttgaattagtgatttatagtattaaacttgatcat |
42692270 |
T |
|
| Q |
216 |
agatagatcatacaaaatcatgtgacaggcaaatggcgtaggaaggaattggt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42692271 |
agatagatcatacaaaatcatgtgacaggcaaatggcgtaggaaggaattggt |
42692323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University