View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16196_high_18 (Length: 225)
Name: NF16196_high_18
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 48756190 - 48755989
Alignment:
| Q |
18 |
gaagcacgaatctagaacaaaaatgttcactttccacctaaatcgaat-----cgatcgatccttgttttgtttgtttcataaatcggttttgacattaa |
112 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48756190 |
gaagcacaaatctagaacaaaaacgttcacttttcacctaaatcgaattgaatcgatcgatccttgttttgtttgtttcataaatcggttttgacattaa |
48756091 |
T |
|
| Q |
113 |
acaagtggggcgtatctcatgcaaataaactctaatgccactaaaaacatgatagttgtggtatggtttaccttgatgattcgccttccacgatgatgat |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48756090 |
acaagtgggacgtatctcatgcaaataaactctgatgccactaaaagcatgatagttgtggtatggtttaccttgatgactcgccttccatgatgatgat |
48755991 |
T |
|
| Q |
213 |
ga |
214 |
Q |
| |
|
|| |
|
|
| T |
48755990 |
ga |
48755989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 23560254 - 23560422
Alignment:
| Q |
42 |
gttcactttccacctaaatcgaatcgatcgatccttgttttgtttgtttcataaatcggttttgacattaaacaagtggggcgtatctcatgcaaataaa |
141 |
Q |
| |
|
||||| |||| | |||||||||||||||||||| || || ||||||||| ||||||||||||||| |||| | || ||| |||| | | ||||||||||| |
|
|
| T |
23560254 |
gttcagtttcaagctaaatcgaatcgatcgatcgtttttatgtttgtttgataaatcggttttgatattacagaactggagcgttttttatgcaaataaa |
23560353 |
T |
|
| Q |
142 |
ctctaatgccactaaaaacatgatagttgtggtatggtttaccttgatgattcgccttccacgatgatg |
210 |
Q |
| |
|
||||||||||| | || |||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
23560354 |
ctctaatgccataataaccatgatagttgtggaatggtttaccttgatgagtcgccttccatgatgatg |
23560422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 30312042 - 30312192
Alignment:
| Q |
60 |
tcgaatcgatcgatccttgttttgtttgtttcataaatcggttttgacattaaacaagtggggcgtatctcatgcaaataaactctaatgccactaaaaa |
159 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||| |||| | || | | |||| | | |||||||||||||||||||||| | || |
|
|
| T |
30312042 |
tcgaatcgatcgatcctttttatgtttgtttgataaatcggttttgatattacagaacttgagcgtttttgatgcaaataaactctaatgccataataac |
30312141 |
T |
|
| Q |
160 |
catgatagttgtggtatggtttaccttgatgattcgccttccacgatgatg |
210 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||| ||||||| |
|
|
| T |
30312142 |
catgatagttgtggaatagtttaccttgatgtgtcgccttccatgatgatg |
30312192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University