View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_high_20 (Length: 224)
Name: NF16196_high_20
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 6409321 - 6409516
Alignment:
| Q |
15 |
ttattcttagctacttcaccatatacacatatactccatggatttcattttgtgtatattacagatatgtttctttgatagccattgtttatgttgctaa |
114 |
Q |
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| T |
6409321 |
ttattcttagctacttcaccatatacacatatactccatggatttcattttgtgtatattacagatatgtttctttgatagccattgtttatgttgctaa |
6409420 |
T |
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| Q |
115 |
atatgttgatatgacctattattaataaattagcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatagt |
210 |
Q |
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| T |
6409421 |
atatgttgatatgacctattattaataaattagcttggacagttagaattatcaaatgtgaaaatagaactagattgtaaactagtggttgatagt |
6409516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 28626611 - 28626549
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatag |
209 |
Q |
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| T |
28626611 |
gcttggatagttagaattatcaaatgtgctaatagaactagattgtaaactagtggttgatag |
28626549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 4318976 - 4318928
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaa |
195 |
Q |
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| T |
4318976 |
gcttggacagttaaaattatcaaatgtgcaattagaactagattgtaaa |
4318928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 38176497 - 38176435
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatag |
209 |
Q |
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| T |
38176497 |
gcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatag |
38176435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 1527124 - 1527186
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatag |
209 |
Q |
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| T |
1527124 |
gcttggacagttagaattatcaaatgtgcaattagaactagattgtaaactagtggtggatag |
1527186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 8618574 - 8618512
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatag |
209 |
Q |
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|||||||||||| | ||||||| ||||||| || |||||||||||||| |||||||||||| |
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| T |
8618574 |
gcttggacagttgggattatcagatgtgcacatcgaactagattgtaagctagtggttgatag |
8618512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 44585987 - 44585925
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatag |
209 |
Q |
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|||| ||||||| | ||||||| ||||||| || ||||||||||||||| |||||||||||| |
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| T |
44585987 |
gctttgacagttgggattatcatatgtgcacattgaactagattgtaaactagtggttgatag |
44585925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 46342825 - 46342887
Alignment:
| Q |
147 |
gcttggacagttagaattatcaaatgtgcaaatagaactagattgtaaatcagtggttgatag |
209 |
Q |
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||||||||| |||| ||||| | ||||||| || ||||||||||||||| |||||||||||| |
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| T |
46342825 |
gcttggacaattaggattattagatgtgcacattgaactagattgtaaacaagtggttgatag |
46342887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 5299318 - 5299354
Alignment:
| Q |
170 |
atgtgcaaatagaactagattgtaaatcagtggttga |
206 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
5299318 |
atgtgcacatagaactagattgtaaattagtggttga |
5299354 |
T |
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