View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16196_high_21 (Length: 214)

Name: NF16196_high_21
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16196_high_21
NF16196_high_21
[»] chr3 (9 HSPs)
chr3 (1-197)||(476364-476560)
chr3 (55-197)||(481282-481424)
chr3 (1-120)||(1186648-1186767)
chr3 (1-120)||(1204712-1204831)
chr3 (1-120)||(1304259-1304378)
chr3 (70-135)||(5360662-5360727)
chr3 (1-53)||(8032879-8032931)
chr3 (1-43)||(481451-481493)
chr3 (1-53)||(5360602-5360654)
[»] chr5 (1 HSPs)
chr5 (64-135)||(33957701-33957772)
[»] chr8 (3 HSPs)
chr8 (1-135)||(26291330-26291455)
chr8 (1-135)||(26304587-26304712)
chr8 (1-135)||(26337942-26338067)
[»] scaffold0438 (1 HSPs)
scaffold0438 (1-122)||(5724-5836)
[»] chr2 (1 HSPs)
chr2 (7-52)||(43874803-43874848)
[»] chr4 (1 HSPs)
chr4 (8-52)||(52187295-52187339)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 476560 - 476364
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476560 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtggtt 476461  T
Q  101 aatgctgggaaattgaaagaatttggaaatatttgtgtcgagccagagcgaaacatagaacaactagaaagatgaagggaggttaaagtatgagatg 197  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  476460 aatgctgggaaattgagagaatttggaaatatttgtgtcgagccagagcgaaacaaagaataactagaaagatgaagggaggttaaagtatgagatg 476364  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 481424 - 481282
Alignment:
Q  55 acttgtgccgcaacgaaaggcaaggcgctctagagacagagtggttaatgctgggaaattgaaagaatttggaaatatttgtgtcgagccagagcgaaac 154  Q
    |||||||| || ||||||||||| |  || |||||||| ||||||||||||||||||||||| | ||||||||||||||||  ||||||||||| | |||    
T  481424 acttgtgctgcgacgaaaggcaacgtactttagagacaaagtggttaatgctgggaaattgagaaaatttggaaatatttgcatcgagccagagtgtaac 481325  T
Q  155 atagaacaactagaaagatgaagggaggttaaagtatgagatg 197  Q
    | | ||| |||||||||||||||||| ||||||||||||||||    
T  481324 aaaaaactactagaaagatgaagggacgttaaagtatgagatg 481282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1186767 - 1186648
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacg---caaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtg 97  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||| | ||    |||  ||||| |||| ||| |||| | ||||||    
T  1186767 caaagtattcaacatgttaaatgtggaaaaggggtcgacgacagaaccatcatcatca-tcgt--tacaagaaaaggaaaggtgctttagatagagagtg 1186671  T
Q  98 gttaatgctgggaaattgaaaga 120  Q
    ||||||||||||| |||||||||    
T  1186670 gttaatgctgggagattgaaaga 1186648  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1204831 - 1204712
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacg---caaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtg 97  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||| | ||    |||  ||||| |||| ||| |||| | ||||||    
T  1204831 caaagtattcaacatgttaaatgtggaaaaggggtcgacgacagaaccatcatcatca-tcgt--tacaagaaaaggaaaggtgctttagatagagagtg 1204735  T
Q  98 gttaatgctgggaaattgaaaga 120  Q
    ||||||||||||| |||||||||    
T  1204734 gttaatgctgggagattgaaaga 1204712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1304259 - 1304378
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacg---caaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtg 97  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||| | ||    |||  ||||| |||| ||| |||| | ||||||    
T  1304259 caaagtattcaacatgttaaatgtggaaaaggggtcgacgacagaaccatcatcatca-tcgt--tacaagaaaaggaaaggtgctttagatagagagtg 1304355  T
Q  98 gttaatgctgggaaattgaaaga 120  Q
    ||||||||||||| |||||||||    
T  1304356 gttaatgctgggagattgaaaga 1304378  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 5360662 - 5360727
Alignment:
Q  70 aaaggcaaggcgctctagagacagagtggttaatgctgggaaattgaaagaatttggaaatatttg 135  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||||| ||||    
T  5360662 aaaggcaaggctctttagagacaaagtggttaatgctgggaaattgagagaatctggaaatctttg 5360727  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8032879 - 8032931
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcat 53  Q
    ||||||| |||||||||||||||  |||||||| ||||| |||||||||||||    
T  8032879 caaagtagtcaacatgttaaatgcagaaaagggatcgacacaaccatcatcat 8032931  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 481493 - 481451
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaa 43  Q
    |||||||| |||||||||||||| ||||||||||||||| |||    
T  481493 caaagtatccaacatgttaaatgcggaaaaggggtcgacacaa 481451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5360602 - 5360654
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcat 53  Q
    |||||||  |||||||||||||  |||||||||||||||  ||||||||||||    
T  5360602 caaagtagacaacatgttaaattcggaaaaggggtcgacaaaaccatcatcat 5360654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 33957701 - 33957772
Alignment:
Q  64 gcaacgaaaggcaaggcgctctagagacagagtggttaatgctgggaaattgaaagaatttggaaatatttg 135  Q
    ||||| |||||||||| ||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  33957701 gcaaccaaaggcaaggtgctttagagacagagtggttaatgctgggaaactgagagaatgtggaaatatttg 33957772  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26291455 - 26291330
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtggtt 100  Q
    ||||||| |||||||||| ||||||||||| || || || |||||||||||||          ||||| |||| | ||| ||| ||||||||||||||||    
T  26291455 caaagtagtcaacatgttgaatgtggaaaaaggatcaacacaaccatcatcatt---------gcaaccaaagacgaggtgctttagagacagagtggtt 26291365  T
Q  101 aatgctgggaaattgaaagaatttggaaatatttg 135  Q
    |||| ||||||| ||| ||||| ||||||||||||    
T  26291364 aatgttgggaaactgagagaatgtggaaatatttg 26291330  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26304712 - 26304587
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtggtt 100  Q
    ||||||| |||||||||| ||||||||||| || || || |||||||||||||          ||||| |||| | ||| ||| ||||||||||||||||    
T  26304712 caaagtagtcaacatgttgaatgtggaaaaaggatcaacacaaccatcatcatt---------gcaaccaaagacgaggtgctttagagacagagtggtt 26304622  T
Q  101 aatgctgggaaattgaaagaatttggaaatatttg 135  Q
    |||| ||||||| ||| ||||| ||||||||||||    
T  26304621 aatgttgggaaactgagagaatgtggaaatatttg 26304587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 26338067 - 26337942
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtggtt 100  Q
    ||||||| |||||||||| ||||||||||| || || || |||||||||||||          ||||| |||| | ||| ||| ||||||||||||||||    
T  26338067 caaagtagtcaacatgttgaatgtggaaaaaggatcaacacaaccatcatcatt---------gcaaccaaagacgaggtgctttagagacagagtggtt 26337977  T
Q  101 aatgctgggaaattgaaagaatttggaaatatttg 135  Q
    |||| ||||||| ||| ||||| ||||||||||||    
T  26337976 aatgttgggaaactgagagaatgtggaaatatttg 26337942  T

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Target: scaffold0438 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5836 - 5724
Alignment:
Q  1 caaagtattcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatcatcacttgtgccgcaacgaaaggcaaggcgctctagagacagagtggtt 100  Q
    ||||||| |||||||||| ||||||||||| || || || |||||||||||||          ||||| |||| | ||| ||| ||||||||||||||||    
T  5836 caaagtagtcaacatgttgaatgtggaaaaaggatcaacacaaccatcatcat---------tgcaaccaaagacgaggtgctttagagacagagtggtt 5746  T
Q  101 aatgctgggaaattgaaagaat 122  Q
    |||| ||||||| ||| |||||    
T  5745 aatgttgggaaactgagagaat 5724  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 43874803 - 43874848
Alignment:
Q  7 attcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatca 52  Q
    |||||||||||||||||| |||||||| ||||| || |||||||||    
T  43874803 attcaacatgttaaatgttgaaaagggctcgacacagccatcatca 43874848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 52187339 - 52187295
Alignment:
Q  8 ttcaacatgttaaatgtggaaaaggggtcgacgcaaccatcatca 52  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||||    
T  52187339 ttcaacattttaaacgtggaaaagggctcgacacaaccatcatca 52187295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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