View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_high_24 (Length: 207)
Name: NF16196_high_24
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 12912083 - 12911906
Alignment:
| Q |
20 |
ccttcccctactctcaactccactgaatttccactaaataaaccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaaat |
119 |
Q |
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| T |
12912083 |
ccttcccctactctcaactccactgaatttccactaaatataccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaaat |
12911984 |
T |
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| Q |
120 |
taaattttatacattcacacacatagctatatacatggtaacagcattttacgtaattcataccttgtctgatgatgt |
197 |
Q |
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| T |
12911983 |
taaattttatacattcacacacatagctatatacatggtaacagcattttacgtaattcataccttgtctgatgatgt |
12911906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 12902045 - 12902148
Alignment:
| Q |
20 |
ccttcccctactctcaactccactgaatttccactaaataaaccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaaat |
119 |
Q |
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|||||||||| |||||||||| |||||||||||||||| | ||| | || ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12902045 |
ccttcccctaacttcaactccaccgaatttccactaaatatattatgtctttttaacagctcacttggtagtacaaccaactgcatatataagaacaaat |
12902144 |
T |
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| Q |
120 |
taaa |
123 |
Q |
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|||| |
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| T |
12902145 |
taaa |
12902148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 12928941 - 12929002
Alignment:
| Q |
136 |
acacacatagctatatacatggtaacagcattttacgtaattcataccttgtctgatgatgt |
197 |
Q |
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| T |
12928941 |
acacacatagctatatacatggtaacaatattttacgtgattcataccttgtctaatgatgt |
12929002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 21116726 - 21116548
Alignment:
| Q |
20 |
ccttcccctactctcaactccactgaatttccactaaataaaccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaaat |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| | |||| |||||||||| |||||| ||||||| || ||||||||| | |||||||| |
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| T |
21116726 |
ccttcccctactttcaactccactgaatctccactaaatatattatgcctcttcaacag---acttggcagtacaatcagctgcatatacaagaacaaat |
21116630 |
T |
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| Q |
120 |
t-aaattttatacattcacacacata--gctatatacatggtaacagcattttacgtaattcataccttgtctgatgatgtc |
198 |
Q |
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| ||| | |||||||| |||| | ||||||||||||||| || ||||||| || ||||||||||| ||| |||||||| |
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| T |
21116629 |
taaaaaaattcacattcacgcacaaagcgctatatacatggtatcaacattttatgtgattcataccttatctaatgatgtc |
21116548 |
T |
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