View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16196_high_3 (Length: 422)
Name: NF16196_high_3
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 18460361 - 18459952
Alignment:
| Q |
1 |
gatccataaccaccatcatgatgattttcatttccactcattaaagggtaaccatttttgtcatgattatgtctttcaacttcaacctctatgttagact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460361 |
gatccataaccaccatcatgatgattttcatttccactcattaaagggtaaccatttttgtcttgattatgtctttcaacttcaacctctatgttagact |
18460262 |
T |
|
| Q |
101 |
ctctattagacttcatttccatgtccattgaaaggaaactaccttgatgggagttttttggactcctttgtacatcagatgatcctgcaagatggaaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460261 |
ctctattagacttcatttccatgtccattgaaaggaaactaccttgatgggagttttttggactcctttgtacatcagatgatcctgcaagatggaaacc |
18460162 |
T |
|
| Q |
201 |
agaattggattgaaaggaccctccttctcctcccattgttgatgttgacattgaattattggaacttgaaattactgttggagaagggttttggttgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460161 |
agaattggattgaaaggaccctccttctcctcccattgttgatgttgacattgaattattggaacttgaaattactgttggagaagggttttggttgttg |
18460062 |
T |
|
| Q |
301 |
aagttttctgcctttgaatgaagattattaatttgatcaagttttgtgacacctaattcttttgatttatttgtgttatccttggagtcattattctcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460061 |
aagttttctgcctttgaatgaagattattaatttgatcaagttttgtgacacctaattcttttgatttatttgtgttatccttggagtcattattctcct |
18459962 |
T |
|
| Q |
401 |
cttgctcctt |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
18459961 |
cttgctcctt |
18459952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University