View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16196_high_4 (Length: 409)
Name: NF16196_high_4
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_4 |
 | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0718 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 24619924 - 24620020
Alignment:
| Q |
113 |
tactttaattagcacatatcataaccaatgagattttgtgtatgagtgtcgatccatgttcgaatgtttattttgctcgagcttgcattgcttctctaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24619924 |
tactttaattagcacatatcataaccaatgagattttgtgtatgagtg----tccatg-tcgaatgtttattttgctcgagcttgcattgcttctctaca |
24620018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 24619860 - 24619929
Alignment:
| Q |
16 |
tcatcatgatcattatatattttccctatatcataactcatgcgattttgagtcgaatattttctacttt |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24619860 |
tcatcatgatcattatatattttccctatatcataactcatgcgattttgagtcaaatattttctacttt |
24619929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 40618 - 40506
Alignment:
| Q |
164 |
atccatgttcgaatgtttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactc |
263 |
Q |
| |
|
||||||||| ||||||| ||||| || || |||| |||| ||||||||||||||| |||| ||||| |||||||||||| |||| |||| || ||||| |
|
|
| T |
40618 |
atccatgtttgaatgtt-atttttctggaacttgaattggttctctacagactat---tggccgtattttcatacacacgaggcac-ttgtttggtactc |
40524 |
T |
|
| Q |
264 |
taagccttttcaagccac |
281 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
40523 |
tgagccttttcaagccac |
40506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 23690352 - 23690240
Alignment:
| Q |
164 |
atccatgttcgaatgtttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactc |
263 |
Q |
| |
|
||||||||| ||||||| ||||| || |||||||||||| ||||||||||||||| ||| |||| |||||||||| | |||| |||| || ||||| |
|
|
| T |
23690352 |
atccatgtttgaatgtt-atttttctagagcttgcattggttctctacagactat---tggtcatattttcatacacaccaggcac-ttgtttggtactc |
23690258 |
T |
|
| Q |
264 |
taagccttttcaagccac |
281 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
23690257 |
tgagccttttcaagccac |
23690240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 2878200 - 2878297
Alignment:
| Q |
180 |
ttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagcc |
279 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||| |||| || |||||| |||||||||||||| |
|
|
| T |
2878200 |
ttatttttctagagcttgcattggttctctacagact---attggtcgtattttcatacacacgaggca-tttgtttggtactctgagccttttcaagcc |
2878295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 9346470 - 9346373
Alignment:
| Q |
180 |
ttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagcc |
279 |
Q |
| |
|
||||||| |||||| ||||| || |||||||||| |||| ||| ||||| |||||||||||| |||| |||| || |||||| |||||||||||||| |
|
|
| T |
9346470 |
ttattttcctcgagtttgcactggttctctacagtctat---tggtcgtattgtcatacacacgaggcac-ttgtttggtactctgagccttttcaagcc |
9346375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 21322706 - 21322778
Alignment:
| Q |
302 |
tgctaatccactatgagcctccatgcaatattct---ttgttttggtgatgaatgatgtcacaagttttgaac |
371 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||| |||||||||||||||| |||||| || |||||||| |
|
|
| T |
21322706 |
tgctaatccactttgagcctccatgaaattttctttgttgttttggtgatgaaccatgtcataaattttgaac |
21322778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0718 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0718
Description:
Target: scaffold0718; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 1209 - 1295
Alignment:
| Q |
191 |
gagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagccac |
281 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| || ||||||||| |||| |||| || |||||| |||||||||||||||| |
|
|
| T |
1209 |
gagcttgcattggttctctacagact---gttggccatattttcgtacacacgaggcac-ttgtttggtactctgagccttttcaagccac |
1295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University