View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_high_6 (Length: 329)
Name: NF16196_high_6
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_high_6 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 6304 - 6624
Alignment:
| Q |
1 |
aatttattatgcaatctttcatctttatcgatccccgtcttctactcaattcttgtttctcgttttcacaattcctgtttctctttttcaaattttcttc |
100 |
Q |
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| T |
6304 |
aatttattatgcaatctttcatctttatctatccccgtcttctactcaattcttgtttctcgttttcacaattcctgtttctctttttcaaattttcttc |
6403 |
T |
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| Q |
101 |
atcaacgctaccaatggnnnnnnnnatt-------------atgttgtagtaatactgtaacactgttggagttaagtgatattagattatgatttaaaa |
187 |
Q |
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| T |
6404 |
atcaacgctaccaattttttattttatttttttattttattatgttgtagtaatactgtaacactgttggagttaagtgatattagattatgatttaaaa |
6503 |
T |
|
| Q |
188 |
ttggagaagaagatgaaattggagttggtgttgatggattatgaattacaagtgaagaagaaggtgaacttgaagttgggtgttgatggagtttggggaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6504 |
ttggagaagaagatgaaattggagttggtgttgatggattatgaattacaagtgaagaagaaggtgaacttgaagttgcgtgttgatggagtttggggaa |
6603 |
T |
|
| Q |
288 |
gaagaaataaacatatgttaa |
308 |
Q |
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| T |
6604 |
gaagaaataaacatatgttaa |
6624 |
T |
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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 43740907 - 43740994
Alignment:
| Q |
192 |
agaagaagatgaaattggag-ttggtgttgatggattatgaattacaagtgaagaagaaggtgaacttgaagttgggtgttgatggag |
278 |
Q |
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| T |
43740907 |
agaagaagatgaaaatggaggttggtgttgatggattataaattaaaagtgaagaagaaggtgaaattgaagttgggtgttgatggag |
43740994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 12398208 - 12398290
Alignment:
| Q |
192 |
agaagaagatgaaattggag-ttggtgttgatggattatgaattacaagtgaagaagaaggtgaacttgaagttgggtgttga |
273 |
Q |
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|||||||||| ||| ||||| |||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
12398208 |
agaagaagatcaaaatggaggttggtgttgatggattataaattaaatgtgaagaagaaggtgaaattgaagttgggtgttga |
12398290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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