View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16196_low_12 (Length: 325)
Name: NF16196_low_12
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 41720843 - 41721148
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720843 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
41720942 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720943 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
41721042 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721043 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
41721142 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
41721143 |
gatgat |
41721148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 34354443 - 34354748
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
34354443 |
catgtgtttggttgtcctgtgtacgtgatgtacaactcccaagacagaacgaagttggacccaaagttcagaaaatgtatcttcttgggttatgctgaca |
34354542 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34354543 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttattgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
34354642 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
34354643 |
tgacagcacttctaaagagactgctataatgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccgatgcacggagaacaagaacca |
34354742 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
||||| |
|
|
| T |
34354743 |
tatgat |
34354748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 27876593 - 27876288
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876593 |
catgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
27876494 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876493 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
27876394 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876393 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
27876294 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
27876293 |
gatgat |
27876288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 26978602 - 26978487
Alignment:
| Q |
161 |
tagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26978602 |
tagtctttgcagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtga |
26978503 |
T |
|
| Q |
261 |
ttcttctgaagctgaa |
276 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26978502 |
ttcttctgaagctgaa |
26978487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 8481557 - 8481374
Alignment:
| Q |
27 |
gatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggat |
126 |
Q |
| |
|
|||||||| ||||||||| ||||| ||| || |||||||| | |||||||| |||||||||||| ||||||| | |||||||||||| |||||||| |
|
|
| T |
8481557 |
gatgtacatctcccaagacagaacaaagacagatccaaagtctaaaaaatgtatattcttgggttatactgacaagatgaaggggtatcgcttgtgggat |
8481458 |
T |
|
| Q |
127 |
cccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
210 |
Q |
| |
|
|||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8481457 |
cccactattcgcaagcttgttgttggcagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
8481374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 300
Target Start/End: Complemental strand, 18148970 - 18148789
Alignment:
| Q |
119 |
tgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaaga |
218 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| || |||||||||||||| ||||||||| || | |||||||| ||||| |||| ||||| ||||| |
|
|
| T |
18148970 |
tgtgagattccactacccgcaaggttgttgttatcatggatgtagtctttgtagaaaatgagttgtagagtgagcataaaaaagacaacactttcaaaga |
18148871 |
T |
|
| Q |
219 |
gactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
|| ||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||||| | |||||| | ||||||||| |
|
|
| T |
18148870 |
gattgcaatagtgcatatggaagaaaaattcaaggaaagtgattcttctgaagctgaatcagagcacgatgtgcaagaacca |
18148789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 48699705 - 48699400
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699705 |
catgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
48699606 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699605 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
48699506 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699505 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
48699406 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
48699405 |
gatgat |
48699400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 30948067 - 30947762
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30948067 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgctgaca |
30947968 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947967 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
30947868 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947867 |
tgacagcacttttaaagagactgctattctgcagatagaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
30947768 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30947767 |
gatgat |
30947762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 42268336 - 42268641
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268336 |
catgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
42268435 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42268436 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtaagcagaaaaa |
42268535 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42268536 |
tgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacca |
42268635 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
42268636 |
gatgat |
42268641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 2001327 - 2001521
Alignment:
| Q |
18 |
tgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgc |
117 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| || | || |||||||| || || ||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
2001327 |
tgtgtacgcaatgaacaactcccaagaaagaacaaaactagatccaaagtctagaaattgtatattcttgggttatgctgacaacgtgaaggggtatcgc |
2001426 |
T |
|
| Q |
118 |
ctgtgggatcccactgcccgcaaggttgttgttagcaggg--atgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
210 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2001427 |
ttgtgggatcccactgctcacaagcttgttgttagcagagatatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
2001521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 5821159 - 5820854
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821159 |
catgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
5821060 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5821059 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtaagcagaaaaa |
5820960 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5820959 |
tgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacca |
5820860 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
5820859 |
gatgat |
5820854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 2815147 - 2814859
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
2815147 |
catgtgtttggttgtcctgtgtatgtgatgtacaactctcaagaaagaacaaagttggacccaaagtctaagaaatgtatcttcttgggttatgctgaca |
2815048 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815047 |
atgttaaggggtatcgcctgtggggtcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
2814948 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaag |
289 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||| |
|
|
| T |
2814947 |
tgacagcatttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttcagaatcagaatcagtgcacgaag |
2814859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 42587400 - 42587654
Alignment:
| Q |
17 |
ctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcg |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||| |||||||||||||||||||| || || |||||||| |
|
|
| T |
42587400 |
ctgtgtacgcaatgtacaactcccaagaaagaacaaagctagatccaaagtctagaaaatgtatattcttgggttatgctgacaacgtgaaagggtatcg |
42587499 |
T |
|
| Q |
117 |
cctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaa |
216 |
Q |
| |
|
| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
|
|
| T |
42587500 |
cttgtgggatcccactgctcacaagcttgttgttagcagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacactgccaaa |
42587599 |
T |
|
| Q |
217 |
gagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaag |
271 |
Q |
| |
|
|| ||| || |||| |||| ||| || || |||||| |||||||||||||| |
|
|
| T |
42587600 |
gaaactactgcagtggagatagaaatgaagtctaaagaagatgattcttctgaag |
42587654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 827912 - 828217
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827912 |
catgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
828011 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
828012 |
atgttaaggggtatcgcctgtgggatcccactacccgcaaggttgttgttagcagggatctagtctttgcagaaaatgaactgcaaagtaagcagaaaaa |
828111 |
T |
|
| Q |
201 |
tgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacca |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
828112 |
tgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacca |
828211 |
T |
|
| Q |
301 |
gatgat |
306 |
Q |
| |
|
|||||| |
|
|
| T |
828212 |
gatgat |
828217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 9441976 - 9441670
Alignment:
| Q |
1 |
catgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441976 |
catgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgaca |
9441877 |
T |
|
| Q |
101 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgc-agaaaatgaactgcaaagtgagcagaaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9441876 |
atgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcaagaaaatgaactgcaaagtaagcagaaaa |
9441777 |
T |
|
| Q |
200 |
atgacagcacttctaaagagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9441776 |
atgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacc |
9441677 |
T |
|
| Q |
300 |
agatgat |
306 |
Q |
| |
|
||||||| |
|
|
| T |
9441676 |
agatgat |
9441670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 24596356 - 24596102
Alignment:
| Q |
17 |
ctgtgtacgtgatgtacaactcccaagaaagaacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcg |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| | || |||||||| || |||||||| |||||||||||||||||||| || || |||||||| |
|
|
| T |
24596356 |
ctgtgtacgcaatgtacaactcccaagaaagaacaaagctagatccaaagtctagaaaatgtatattcttgggttatgctgacaacgtgaaagggtatcg |
24596257 |
T |
|
| Q |
117 |
cctgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaa |
216 |
Q |
| |
|
| | |||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
|
|
| T |
24596256 |
cttatgggatcccactgctcacaagcttgttgttagcagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacactgccaaa |
24596157 |
T |
|
| Q |
217 |
gagactgctatagtgcagatggaagaaaaatccaaagaaagtgattcttctgaag |
271 |
Q |
| |
|
|| ||| || |||| |||| ||| ||||| |||||| | |||||||||||| |
|
|
| T |
24596156 |
gaaactactgcagtggagatagaaatgaaatctaaagaagataattcttctgaag |
24596102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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