View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_14 (Length: 308)
Name: NF16196_low_14
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 50371497 - 50371221
Alignment:
| Q |
28 |
ttaactatttctatgtgaggaactagttaaggtggatgtctcctttcttgcatagactcttcatgttctacgaattagattaattggagagnnnnnnntg |
127 |
Q |
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| T |
50371497 |
ttaactatttctatgtgaggaactagttaag-tggatgtcaccttccttgcatagactcttcatgatctacgaatgagattaattggagagaaaaaaatg |
50371399 |
T |
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| Q |
128 |
aaagagatagaaaaggccagcaatctaatttctattctttaccaacatatatgatgcatgcgctaagaagtgta----acccaagcaaaggtcatagtct |
223 |
Q |
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| T |
50371398 |
aaagagatagaaaaggccagcaatctaatttctgttctttaccaacatatatgatgcatgcgctaagaagtgtacgtaactcaagcaaatgtcatagtct |
50371299 |
T |
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| Q |
224 |
ttaaattaagttgatggtgactttacctttcatttggcacatgaaaaccatgttactctctccccacaattcttctca |
301 |
Q |
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| T |
50371298 |
ttaaattaagttgatggtgactttacctttcatttggcacatgaaaaccatgttactctctccccacaattcttctca |
50371221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 55075052 - 55075127
Alignment:
| Q |
32 |
ctatttctatgtgaggaactagttaaggtggatgtctcctttcttgcatagactcttcatgttctacgaattagatt |
108 |
Q |
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| T |
55075052 |
ctatttctatatggggaactagttaag-tggatgtcaccttccttgcatagactcttcatgttctgcgaatgagatt |
55075127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 55075194 - 55075264
Alignment:
| Q |
231 |
aagttgatggtgactttacctttcatttggcacatgaaa-accatgttactctctccccacaattcttctca |
301 |
Q |
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| T |
55075194 |
aagttgattgtgacttaacctttcacttggcacatgaaagtccatgtta-tctctccccacaaatcatctca |
55075264 |
T |
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