View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_17 (Length: 280)
Name: NF16196_low_17
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 12911929 - 12911662
Alignment:
| Q |
1 |
aattcataccttgtctgatgatgttataaaaaccttgaacatctcatgtaaattcagacttacagaatctgcagtaattaacaacaaagaaaacatagtt |
100 |
Q |
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| T |
12911929 |
aattcataccttgtctgatgatgttataaaaaccttgaacatctcatgtaaattcagacttacagaatctgcagtaattaacaacaaagaaaacatagtt |
12911830 |
T |
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| Q |
101 |
taaggagatttgcatgaattgtacacnnnnnnncacgaaagcaaaaattaagatgaatacccctaaaaccatgtgtttttgtgcagctccttgaaattcc |
200 |
Q |
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| T |
12911829 |
taaggagatttgcatgaattgtacacaaaaaaacacgaaagcaaaaattaagatgaatacccctaaaaccatatgtttttgtgcagctctttgaaattcc |
12911730 |
T |
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| Q |
201 |
atctccaaaattgcccgcatattccatatcttttactggtgttgtctctgatttttcttggactcctt |
268 |
Q |
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| T |
12911729 |
atctccaaaattgcccgcatattccatatcttttactggtgttgtctctgatttttcttggactcctt |
12911662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 12928980 - 12929248
Alignment:
| Q |
2 |
attcataccttgtctgatgatgttataaaaaccttgaacatctcatgtaaattcagacttacagaatctgcagtaattaacaacaaagaaaacatagttt |
101 |
Q |
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| T |
12928980 |
attcataccttgtctaatgatgttacagaaaccttgaatttgtcatgtgaatttggacttacagaacctgcagtaattaagaacaaagaaaacatagttt |
12929079 |
T |
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| Q |
102 |
aaggagatttgcatgaat----tgtacacnnnnnnncacgaaagcaaaaattaagatgaatacccctaaaaccatgtg-tttttgtgcagctccttgaaa |
196 |
Q |
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| T |
12929080 |
aaggatatttgcatgaatattgtgtacacaataaaacttcaaaaataaaattaagatgaatactcctaagaccatatgttttttgggcagctgtttgaaa |
12929179 |
T |
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| Q |
197 |
ttccatctccaaaattgcccgcatattccatatcttttactggtgttgtctctgatttttcttggactc |
265 |
Q |
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| T |
12929180 |
ttccttctccgaaattgcccacatattccatatcttctactggcattgtcattgattttccttggactc |
12929248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 12918074 - 12918152
Alignment:
| Q |
187 |
ctccttgaaattccatctccaaaattgcccgcatattccatatcttttactggtgttgtctctgatttttcttggactc |
265 |
Q |
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| T |
12918074 |
ctccttgaaattccttctccaaaatcgcatgcatattccaaatcttctactggcattgtctcaaatttttcttgcactc |
12918152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 21116571 - 21116308
Alignment:
| Q |
2 |
attcataccttgtctgatgatgttataaaaaccttgaacatctcatgtaaattcagacttacagaatctgcagtaattaacaacaaagaaaacatagttt |
101 |
Q |
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||||||||||| ||| ||||||| | |||||||||||| ||||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
21116571 |
attcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccggacttacagaatctgcagtaattaagaacaaagaaaacatagtgt |
21116472 |
T |
|
| Q |
102 |
aaggagatttgcatgaattgtacacnnnnnnncacgaaagcaaaaattaagatgaatacccctaaaaccatgtgtttttgtgcagctccttgaaattcca |
201 |
Q |
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||| | ||||||||||||||||||| | |||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |
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| T |
21116471 |
aagcatatttgcatgaattgtacacaataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttcct |
21116372 |
T |
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| Q |
202 |
tctccaaaattgcccgcatattccatatcttttactggtgttgtctctgatttttcttggactc |
265 |
Q |
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||||||||||||||| ||||||||||||||| ||| | |||||| |||||||| ||||||||| |
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| T |
21116371 |
tctccaaaattgcccacatattccatatcttctacgcgcgttgtcactgattttccttggactc |
21116308 |
T |
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