View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16196_low_20 (Length: 265)

Name: NF16196_low_20
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16196_low_20
NF16196_low_20
[»] chr7 (2 HSPs)
chr7 (20-228)||(39266690-39266898)
chr7 (190-228)||(48846906-48846944)
[»] chr5 (1 HSPs)
chr5 (55-227)||(24118451-24118625)
[»] chr4 (1 HSPs)
chr4 (98-227)||(19514460-19514590)
[»] chr2 (3 HSPs)
chr2 (23-228)||(28000685-28000891)
chr2 (162-228)||(41579265-41579331)
chr2 (162-228)||(39356683-39356750)
[»] scaffold0007 (2 HSPs)
scaffold0007 (95-227)||(35669-35802)
scaffold0007 (95-227)||(40982-41115)
[»] chr3 (2 HSPs)
chr3 (162-228)||(43808759-43808825)
chr3 (161-228)||(19468815-19468882)
[»] chr1 (2 HSPs)
chr1 (152-228)||(38505968-38506044)
chr1 (162-228)||(22370311-22370377)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 39266690 - 39266898
Alignment:
Q  20 cagtcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgcggattttaggaaaaacaaaaccatcagtatttgaatttcaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  39266690 cagtcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgttgattttatgaaaaacaaaaccatcagtatttgaatttcaaa 39266789  T
Q  120 tttggcatataggaggagggaaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacc 219  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  39266790 tttggcatataggaggagggaaaattttaggcttaagtgaccattagcaattaatgaaggattattagagggaaaaattaggttaaatgatagcaagacc 39266889  T
Q  220 taataagca 228  Q
    |||||||||    
T  39266890 taataagca 39266898  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 48846906 - 48846944
Alignment:
Q  190 ggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  48846906 ggaaaaattaggttaaactatagcaagacctaataagca 48846944  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 24118625 - 24118451
Alignment:
Q  55 aaaaacaacacttattggtacgcggatt-ttaggaaaaacaaaaccatcagtatttgaatttcaaatttggcatataggaggagggaaaattt-taggtt 152  Q
    |||| ||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||| || | |    
T  24118625 aaaaccaacacttatctatacacggattattagggaaaactaaaccatcagtatttgaatttcaaattaggcatagaagaggagggaaaatttgtaaggt 24118526  T
Q  153 taagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagc 227  Q
    |||| |||||||||||||||||||||| |||||| | ||||||||||||||||| | | ||||||||| ||||||    
T  24118525 taagggaccattagcaattaatgaaggtttattagagggaaaaattaggttaaaaggttgcaagaccttataagc 24118451  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 19514590 - 19514460
Alignment:
Q  98 ccatcagtatttgaatttcaaatttggcatataggaggagggaaaattt-taggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaa 196  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||| | |||||||    
T  19514590 ccatcagcatttgaatttcaaattaggcatagaagaggagggaaaatttgtagggttaagggaccattagcaattaatgaaggtttattagagggaaaaa 19514491  T
Q  197 ttaggttaaatgatagcaagacctaataagc 227  Q
    |||||||||| | | ||||||||| ||||||    
T  19514490 ttaggttaaaaggttgcaagaccttataagc 19514460  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 28000891 - 28000685
Alignment:
Q  23 tcaaatgagcacattggaattgaaataaaaataaaaacaacacttattggtacgcggatttta-ggaaaaacaaaaccatcag-tatttgaatttcaaat 120  Q
    ||||||||| |||||| |||| |||||||||| ||| |||||||||||| || |||||||||| ||||| ||  |||||||||   ||||||||||||||    
T  28000891 tcaaatgagtacattgaaatttaaataaaaatcaaaccaacacttattgataggcggattttatggaaatac--aaccatcagacttttgaatttcaaat 28000794  T
Q  121 ttggcatataggaggagggaaaattt-taggtttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacc 219  Q
      |||||| | |||||||||||||||  ||| || || || ||||||||||||||||| | |||||  | |||||||||||| | |||||||||| ||||    
T  28000793 ggggcatagaagaggagggaaaatttgcaggattgagggatcattagcaattaatgaaaggttatttgagggaaaaattagggttaatgatagcatgacc 28000694  T
Q  220 taataagca 228  Q
    ||| |||||    
T  28000693 taacaagca 28000685  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 41579331 - 41579265
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||  | |||||| | |||||||||||| | |||||||||| |||||||||||||    
T  41579331 attagcaattaatgacaggttattagagggaaaaattagggttaatgatagcatgacctaataagca 41579265  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 39356750 - 39356683
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgat-agcaagacctaataagca 228  Q
    |||||||||||||||  |||||||| | |||||||||||||| | |||| ||| ||||||||||||||    
T  39356750 attagcaattaatgacagattattagagggaaaaattaggtttagtgataagctagacctaataagca 39356683  T

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Target: scaffold0007 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 35802 - 35669
Alignment:
Q  95 aaaccatcagtatttgaatttcaaatttggcatataggaggaggg-aaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaa 193  Q
    ||||||||| ||||||||||||||||| |||||| | |||||||| |||||| || | ||||| |||||||||||| ||||||||  |||||| | ||||    
T  35802 aaaccatcactatttgaatttcaaattaggcatagaagaggagggaaaaattgtaaggttaagggaccattagcaaataatgaagctttattagagggaa 35703  T
Q  194 aaattaggttaaatgatagcaagacctaataagc 227  Q
    |||||| |||||| | | ||||||||| ||||||    
T  35702 aaattatgttaaaaggttgcaagaccttataagc 35669  T

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Target: scaffold0007; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 41115 - 40982
Alignment:
Q  95 aaaccatcagtatttgaatttcaaatttggcatataggaggaggg-aaaattttaggtttaagtgaccattagcaattaatgaaggattattaaaaggaa 193  Q
    ||||||||| ||||||||||||||||| |||||| | |||||||| |||||| || | ||||| |||||||||||| ||||||||  |||||| | ||||    
T  41115 aaaccatcactatttgaatttcaaattaggcatagaagaggagggaaaaattgtaaggttaagggaccattagcaaataatgaagctttattagagggaa 41016  T
Q  194 aaattaggttaaatgatagcaagacctaataagc 227  Q
    |||||| |||||| | | ||||||||| ||||||    
T  41015 aaattatgttaaaaggttgcaagaccttataagc 40982  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 43808759 - 43808825
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||  | |||||| | |||||||||||| | |||||||||| |||||||||||||    
T  43808759 attagcaattaatgacagcttattagagggaaaaattagggttaatgatagcatgacctaataagca 43808825  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 19468882 - 19468815
Alignment:
Q  161 cattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    ||||||||||||||||  ||||| || | |||||||||||||| | || | |||||||||||||||||    
T  19468882 cattagcaattaatgacagattagtagagggaaaaattaggtttagtgcttgcaagacctaataagca 19468815  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 38506044 - 38505968
Alignment:
Q  152 ttaagtgaccattagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    ||||||||| | || ||||||||| | |||||||| | |||||| ||||||||| || ||||| |||||||||||||    
T  38506044 ttaagtgactaataacaattaatgcaagattattagagggaaaatttaggttaagtggtagcatgacctaataagca 38505968  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 22370377 - 22370311
Alignment:
Q  162 attagcaattaatgaaggattattaaaaggaaaaattaggttaaatgatagcaagacctaataagca 228  Q
    |||||||||||||||  | |||||| | |||||||||||| | |||||||| | |||||||||||||    
T  22370377 attagcaattaatgacagcttattagagggaaaaattagggttaatgatagtatgacctaataagca 22370311  T

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