View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_22 (Length: 237)
Name: NF16196_low_22
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 49597110 - 49596973
Alignment:
| Q |
84 |
atttgtatatcgagagttcttctaccttgatgctaaagagttgtcacttaaaataagccctcaaaccaaaaagaccccaaattgaagttgacctacatat |
183 |
Q |
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| T |
49597110 |
atttgtatatcgagaggtcttctaccttgatgctaaagagttgtcacttaaaataagccctcaaaccaaaaagaccccaaattgaagttgacctacatat |
49597011 |
T |
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| Q |
184 |
cctgctttattttacctaaacaaagattgtaaggccat |
221 |
Q |
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| T |
49597010 |
cctgctttattttacctaaacaaggattgtgaggccat |
49596973 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49600003 - 49599933
Alignment:
| Q |
1 |
acatttacattttttccataggtttgatttacataagatctcnnnnnnnatttcaagatgttcaaaattta |
71 |
Q |
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| T |
49600003 |
acatttacattttttccataggtttgatttacatacgatctctttttttatttcaagatgttcaaaattta |
49599933 |
T |
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