View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16196_low_25 (Length: 224)

Name: NF16196_low_25
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16196_low_25
NF16196_low_25
[»] chr5 (17 HSPs)
chr5 (17-205)||(30241578-30241766)
chr5 (60-205)||(30061093-30061238)
chr5 (58-205)||(30750367-30750514)
chr5 (61-205)||(29854032-29854176)
chr5 (28-205)||(30400795-30400972)
chr5 (58-205)||(30337763-30337910)
chr5 (58-205)||(30676526-30676673)
chr5 (21-205)||(30207243-30207427)
chr5 (58-205)||(30484122-30484269)
chr5 (21-205)||(30436534-30436718)
chr5 (70-205)||(30712678-30712813)
chr5 (62-199)||(30520867-30521004)
chr5 (62-199)||(30561207-30561344)
chr5 (58-205)||(29872895-29873042)
chr5 (77-198)||(30476103-30476224)
chr5 (78-205)||(17417851-17417978)
chr5 (151-203)||(30330510-30330562)
[»] chr7 (1 HSPs)
chr7 (58-205)||(26708053-26708200)
[»] chr4 (2 HSPs)
chr4 (58-205)||(20295820-20295967)
chr4 (23-199)||(52352686-52352862)
[»] chr1 (2 HSPs)
chr1 (96-205)||(7100142-7100251)
chr1 (152-205)||(7581051-7581104)
[»] chr3 (1 HSPs)
chr3 (21-137)||(25293148-25293264)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 30241578 - 30241766
Alignment:
Q  17 gaaaagaagtatgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtgga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  30241578 gaaaagaagtatgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatttgctagttttggatgatgtgtgga 30241677  T
Q  117 atcaaaatgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241678 atcaaaatgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 30241766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 30061238 - 30061093
Alignment:
Q  60 aggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatg 159  Q
    ||||||| | |||||| ||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30061238 aggtgcaaggattgttgcaagggaaaagatatttgctggttttggatgatgtgtggaatcaaaatcaacaattggaatcagggttaacacgagagaaatg 30061139  T
Q  160 gaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||    
T  30061138 gaacaaattgaaacctgtgttgtcttgtggatccaaaggtagttcc 30061093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 58 - 205
Target Start/End: Complemental strand, 30750514 - 30750367
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| | |||||| ||||| |||| |||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30750514 aaaggtgcaaggattgttgcaagggaaaagatatttgttggttttggatgatgtatggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 30750415  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||    
T  30750414 tggaacaaattgaaacctgtgttgtcttgtggatccaaaggtagttcc 30750367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 29854176 - 29854032
Alignment:
Q  61 ggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatgg 160  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| ||| ||||||    
T  29854176 ggtgcaagaattgttgcaaggtaaaatatatttgctggttttggatgatgtgtggaatcaaaatcaacaattggaatatgggttaacacaagataaatgg 29854077  T
Q  161 aacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    ||    ||||| ||||||||||| |||||||| ||||||||||||    
T  29854076 aatcatttgaagtctgtgttgtcgtgtggatcaaaaggtagttcc 29854032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 30400972 - 30400795
Alignment:
Q  28 tgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaa 127  Q
    ||||| ||| |||| | |||||| ||| | ||||||||| |||||||| ||||| | ||||||| ||||| |||||||||||||||||||||||||||||    
T  30400972 tgatgccttggattcagatgtaatacaaagaaaggtgcaagaattgttgcaagggagaatatatttgctgattttggatgatgtgtggaatcaaaatgaa 30400873  T
Q  128 caattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    ||||||||||| |||||||||| ||| | ||||||    ||||||||||| ||||| |||||||| ||||||||||||    
T  30400872 caattggaatctgggttaacacaagatagatggaatcgtttgaaatctgttttgtcgtgtggatcaaaaggtagttcc 30400795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 30337763 - 30337910
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| | |||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |    
T  30337763 aaaggtgcaaggattgttgcaagggaaaatatatttgctgattttggatgatgtgtggaatcaaaatgaacaattggaatctgggttaacacaagataga 30337862  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||    ||||||||||| ||||| |||||||| ||||||||||||    
T  30337863 tggaatcgtttgaaatctgttttgtcgtgtggatcaaaaggtagttcc 30337910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 30676526 - 30676673
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| | |||||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |    
T  30676526 aaaggtgcaaggattgttgcaagggaaaagatatttgctggttttggatgatgtgtggaatcaaaatgaacaattggaatctgggttaacacaagataga 30676625  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||    ||||||||||| ||||| |||||||| ||||||||||||    
T  30676626 tggaatcgtttgaaatctgttttgtcgtgtggatctaaaggtagttcc 30676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 30207427 - 30207243
Alignment:
Q  21 agaagtatgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatca 120  Q
    |||||||||| |||||  ||||| |||||| ||| | |||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||  |    
T  30207427 agaagtatgacggcttcaatttagatgtaatacaaagaaaggtgcaggaattgctgcaaggtaaaatatatttgctgattttggatgatgtgtggaacaa 30207328  T
Q  121 aaatgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||| | ||||||||||  || ||||  | |||||||||||| | | ||||||| ||||| || |||||||||||||||||||||    
T  30207327 aaatcagcaattggaattcggattaagccaagagaaatggaatatactgaaatcagtgttatcgtgtggatccaaaggtagttcc 30207243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 205
Target Start/End: Complemental strand, 30484269 - 30484122
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| | |||||| ||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |    
T  30484269 aaaggtgcaaggattgttgcaacggaaaatatatttgctgattttggatgatgtgtggaatcaaaatgaacaattggaatctgggttaacacaagataga 30484170  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||    ||||||||||| ||||| |||||||| ||||||||||||    
T  30484169 tggaatcgtttgaaatctgttttgtcgtgtggatcaaaaggtagttcc 30484122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 30436718 - 30436534
Alignment:
Q  21 agaagtatgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatca 120  Q
    |||||| || || |||||||||| ||||||   | | ||||||||| | |||||| ||||| ||||||||| ||||| ||||||||||||||||||||||    
T  30436718 agaagtgtgctgactttgatttagatgtaatggaaagaaaggtgcaaggattgttgcaagggaaaatatatttgctgattttggatgatgtgtggaatca 30436619  T
Q  121 aaatgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||||||||||||||  |||||||||| ||| | |||| |    ||||||||||| ||||| |||||||| ||||||||||||    
T  30436618 aaatgaacaattggaatttgggttaacacaagatagatgggatcatttgaaatctgttttgtcgtgtggatcaaaaggtagttcc 30436534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 30712678 - 30712813
Alignment:
Q  70 attgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatggaacacattg 169  Q
    |||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||| |    ||     
T  30712678 attgttgcaagggaaaatatatttgctgattttggatgatgtgtggaatcaaaatgaacaattggaatctgggttaacacaagatagatgggatcgttta 30712777  T
Q  170 aaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||||| ||||| |||||||| ||||||||||||    
T  30712778 aaatctgttttgtcgtgtggatcaaaaggtagttcc 30712813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 30520867 - 30521004
Alignment:
Q  62 gtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatgga 161  Q
    ||||| ||||||||  ||||||||| |||| |||| ||||||||||||||||||||   |||| || || ||||||  || ||||  | |||||||||||    
T  30520867 gtgcaagaattgttggaaggtaaaagatatttgcttgttttggatgatgtgtggaacagaaatcaagaactggaatttggattaagccaagagaaatgga 30520966  T
Q  162 acacattgaaatctgtgttgtcatgtggatccaaaggt 199  Q
    | |  |||||||| |||||||||  |||||||||||||    
T  30520967 ataagttgaaatccgtgttgtcaactggatccaaaggt 30521004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 30561207 - 30561344
Alignment:
Q  62 gtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatgga 161  Q
    ||||| ||||||||  ||||||||| |||| |||| ||||||||||||||||||||   |||| || || ||||||  || ||||  | |||||||||||    
T  30561207 gtgcaagaattgttggaaggtaaaagatatttgcttgttttggatgatgtgtggaacagaaatcaagaactggaatttggattaagccaagagaaatgga 30561306  T
Q  162 acacattgaaatctgtgttgtcatgtggatccaaaggt 199  Q
    | |  |||||||| |||||||||  |||||||||||||    
T  30561307 ataagttgaaatccgtgttgtcaactggatccaaaggt 30561344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 205
Target Start/End: Complemental strand, 29873042 - 29872895
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| ||| || | |||||||||| |||| |||| |||||||||||| |||||||  |||   ||||||||||||| ||  ||||||  || ||     
T  29873042 aaaggtgcaagaagtgctgcaaggtaaaaaatatttgctcgttttggatgatctgtggaacaaaacccaacaattggaatctggactaacacatgataag 29872943  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||    ||||| ||||||||||| |||||||| ||||||||||||    
T  29872942 tggaatcatttgaagtctgtgttgtcgtgtggatcaaaaggtagttcc 29872895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 30476224 - 30476103
Alignment:
Q  77 caaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctg 176  Q
    |||||||||| || | ||||||||||||||||||| ||||    |||| ||  |||||||  ||| ||||  | ||| ||||||||||  ||||||||||    
T  30476224 caaggtaaaagatttttgctggttttggatgatgtatggagcagaaatcaaggattggaactaggattaagccaagacaaatggaacaagttgaaatctg 30476125  T
Q  177 tgttgtcatgtggatccaaagg 198  Q
     |||||||||||||||||||||    
T  30476124 cgttgtcatgtggatccaaagg 30476103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 17417851 - 17417978
Alignment:
Q  78 aaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatg-aacaattggaatcagggttaacacgagagaaatggaacacattgaaatctg 176  Q
    ||||||||| |||| | ||||||||||| ||||||||||| ||||||| ||||||| | ||  || ||||  | |||||||||||| || |||||||| |    
T  17417851 aaggtaaaagatattttctggttttggacgatgtgtggaa-caaaatgcaacaattagcattcggattaagccaagagaaatggaatacgttgaaatcag 17417949  T
Q  177 tgttgtcatgtggatccaaaggtagttcc 205  Q
    ||||    |||||||||||||||||||||    
T  17417950 tgtttatgtgtggatccaaaggtagttcc 17417978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 30330510 - 30330562
Alignment:
Q  151 agagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagtt 203  Q
    |||||||||||| |  ||||||| ||||||||| |||| ||||||||||||||    
T  30330510 agagaaatggaatatgttgaaatatgtgttgtcgtgtgtatccaaaggtagtt 30330562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 205
Target Start/End: Complemental strand, 26708200 - 26708053
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| | |||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||| | |    
T  26708200 aaaggtgcaaggattgttgcaagggaaaatatatttgctgattttggatgatgtgtggaatcaaaatgaacaattggaatatgggttaacacaagataga 26708101  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    |||||    ||||||||||| ||||| |||||||| ||||||||||||    
T  26708100 tggaatcgtttgaaatctgttttgtcctgtggatcaaaaggtagttcc 26708053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 20295820 - 20295967
Alignment:
Q  58 aaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaa 157  Q
    ||||||||| | |||||| ||||| ||||||||| || || |||| ||||||||||||||||||||||| ||||||||||| ||||||||||  || | |    
T  20295820 aaaggtgcaaggattgttgcaagggaaaatatatttgttgattttagatgatgtgtggaatcaaaatgatcaattggaatctgggttaacacccgatata 20295919  T
Q  158 tggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    ||||     ||||||||||| |||||||||||||| ||||||||||||    
T  20295920 tggactcgtttgaaatctgttttgtcatgtggatcaaaaggtagttcc 20295967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 52352862 - 52352686
Alignment:
Q  23 aagtatgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatcaaa 122  Q
    |||| ||||||||| |||||| |||| | ||| | ||  | ||| |||||||| |||||||||| |||| || |||||||||||||||||||||||  ||    
T  52352862 aagtgtgatggcttagatttagatgtgatacaaagaagagcgcaagaattgttgcaaggtaaaagatatttgttggttttggatgatgtgtggaatagaa 52352763  T
Q  123 atgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggt 199  Q
    ||  | ||||  ||  ||| ||||  | ||| ||||||||||  ||||||||||||||||| |||||||||||||||    
T  52352762 atctagaattcaaactaggattaagccaagaaaaatggaacaagttgaaatctgtgttgtcctgtggatccaaaggt 52352686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 7100251 - 7100142
Alignment:
Q  96 tggttttggatgatgtgtggaatcaaaatgaacaattggaatcagggttaacacgagagaaatggaacacattgaaatctgtgttgtcatgtggatccaa 195  Q
    ||||||||||||||||||||||  |||||||| |||| ||||  ||  |||  | |||||||||||| |  |||||||| ||||||||||||||||||||    
T  7100251 tggttttggatgatgtgtggaacaaaaatgaagaatttgaattcggactaaaccaagagaaatggaataagttgaaatcggtgttgtcatgtggatccaa 7100152  T
Q  196 aggtagttcc 205  Q
    ||||| ||||    
T  7100151 aggtacttcc 7100142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 7581051 - 7581104
Alignment:
Q  152 gagaaatggaacacattgaaatctgtgttgtcatgtggatccaaaggtagttcc 205  Q
    ||||||||||| | ||||||||||||||||||  ||||||| ||||||| ||||    
T  7581051 gagaaatggaataaattgaaatctgtgttgtctggtggatcgaaaggtacttcc 7581104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 25293148 - 25293264
Alignment:
Q  21 agaagtatgatggctttgatttaaatgtaacacagaaaaaggtgcaggaattgttacaaggtaaaatatatctgctggttttggatgatgtgtggaatca 120  Q
    |||||| ||||| |||||||||| |||||| ||| | ||||||| | ||| | || ||||||||||||||| ||||  ||||||| |||||||||||  |    
T  25293148 agaagtgtgatgcctttgatttagatgtaatacaaagaaaggtgtaagaactattgcaaggtaaaatatatttgcttattttggacgatgtgtggaacaa 25293247  T
Q  121 aaatgaacaattggaat 137  Q
    |||| | ||||||||||    
T  25293248 aaatcagcaattggaat 25293264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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