View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_29 (Length: 211)
Name: NF16196_low_29
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 1460462 - 1460283
Alignment:
| Q |
18 |
attaattgttggattaagagaaatcttactttatgattctatacactcacacactctctcccttgtaaaatggaaatcacacacttgttgttctatattc |
117 |
Q |
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| T |
1460462 |
attaattgttggattaagagaaatcttactttatgattctatacactcacacactctctcccttgtaaaatggaaatcacacacttgttgttctatattc |
1460363 |
T |
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| Q |
118 |
atttaacatgtcttatatacacacaatgatcactactttgttgtgcataggagtgatgactcgataatttggtatatttt |
197 |
Q |
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| T |
1460362 |
atttaacatgtcttatatacacacaatgatcactactttgttgtgcataggagtgatgactcgataatttggtatatttt |
1460283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 1556461 - 1556640
Alignment:
| Q |
18 |
attaattgttggattaagagaaatcttactttatgattctatacactcacacactctctcccttgtaaaatggaaatcacacacttgttgttctatattc |
117 |
Q |
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| T |
1556461 |
attaattgttggattaagagaaatcttactttatgattctatacactcacacactctctcccttgtaaaatggaaatcacacacttgttgttctatattc |
1556560 |
T |
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| Q |
118 |
atttaacatgtcttatatacacacaatgatcactactttgttgtgcataggagtgatgactcgataatttggtatatttt |
197 |
Q |
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| T |
1556561 |
atttaacatgtcttatatacacacaatgatcactactttgttgtgcataggagtgatgactcgataatttggtatatttt |
1556640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 1453721 - 1453642
Alignment:
| Q |
81 |
tgtaaaatggaaatcacacacttgttg-ttctatattcatttaacatgtcttatatacacacaatgatcactactttgtt |
159 |
Q |
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| T |
1453721 |
tgtaaaatggaaataacacacttgttaattctatattcagttgacatgtcttatattcacacaatgatcactactttgtt |
1453642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 1568002 - 1568075
Alignment:
| Q |
81 |
tgtaaaatggaaatcacacacttgttgttctatattcatttaacatgtcttatatacacacaatgatcactactt |
155 |
Q |
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| T |
1568002 |
tgtaaaatggaaat-acgtacttgttattctataaccacttgacatgtcttatatgcacacaatgatcactactt |
1568075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 1453818 - 1453779
Alignment:
| Q |
18 |
attaattgttggattaagagaaatcttactttatgattct |
57 |
Q |
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| T |
1453818 |
attaattgttggattaagagaaatcccactttatgattct |
1453779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1567893 - 1567930
Alignment:
| Q |
20 |
taattgttggattaagagaaatcttactttatgattct |
57 |
Q |
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| T |
1567893 |
taattgttggattaagagaaatcccactttatgattct |
1567930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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