View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_3 (Length: 460)
Name: NF16196_low_3
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 121 - 451
Target Start/End: Original strand, 30199644 - 30199954
Alignment:
| Q |
121 |
atacatcaattattcaatgaattcggaaaaaagaatgtttacttacaaccgtgactgttggaggaagtagctttcagttgaaataacaattgacatctgt |
220 |
Q |
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| T |
30199644 |
atacatcaattattcaatgaattcg-aaaaaagaatgtttacttacaacagtgactgttggaggaaatagctttcagttgaaataacaattgatatctgt |
30199742 |
T |
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| Q |
221 |
taggaaattatagggaatttagaaattacagggaatttagaaatttaggcaattttaatgctcatttataatatatattatagaaaatcacaagaatgaa |
320 |
Q |
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| T |
30199743 |
taggaaattataggga------------------atttagaaatttaggcaattttgatgctcatttataatatat--tatagaaaatcacaggaatgaa |
30199822 |
T |
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| Q |
321 |
agacaaacatacaacaagcagcgtcagtattatttt-ctatatgacaaaattaattctcttaaaaactacatttatagacctcgaggtataatattatta |
419 |
Q |
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| T |
30199823 |
agacaaacatacaacaagctgtgtcagtattatttttctatatgacaaaaccaatcctcttaaaaactacatttatagacctcgaggtataatattacta |
30199922 |
T |
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| Q |
420 |
tgcatgaccctttaaactctttgtagaataat |
451 |
Q |
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| T |
30199923 |
tgcatgaccctttgaactctttgtagaataat |
30199954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 30199482 - 30199572
Alignment:
| Q |
20 |
attgtaccatgaactctgttttattattaaaatatagaaagcatcctcaatattttgctgtttcaatgcttataattcgtattcattgatg |
110 |
Q |
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| T |
30199482 |
attgtaccatgaactctgttttattattaaaatatagaaagcatcctcaatattttgctgtttcaatgcttataattcgtattcattgatg |
30199572 |
T |
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