View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_4 (Length: 441)
Name: NF16196_low_4
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 46972957 - 46973375
Alignment:
| Q |
18 |
ggtccaattcaggagggaaagggaaaactcaacttagcaccaaatcagacaaaattcatcaacagagcgtaagcgaagaacacgcttcgtcgcgtcacaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
46972957 |
ggtccaattcaggagggaaagggaaaactcaacttagcaccaaatcagacaaaattcatcaacagtg--taagcgaagaacacgcttcgtcgcgtcacaa |
46973054 |
T |
|
| Q |
118 |
atctcattctcgaatcttcattctcatttcatccattcgcattttatcaattcgaatctcctatcgttcttcttttccccatttcaacggaaaaattttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46973055 |
atctcattctcgaatcttcattctcatttcatccattcgcattttatcaattcgaatctcctatcgttcttcttttccccatttcaacggaaaaattttc |
46973154 |
T |
|
| Q |
218 |
cgtcgtcgttttacgattctctacctatacattgccatgagaagcgaaagcttcaatcacgttcactttcagggtttcgagcacggattgggttctataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46973155 |
cgtcgtcgttttacgattctctacctatacattgccatgagaagcgaaagcttcaaccacgttcactttcagggtttcgagcacggattgggttctataa |
46973254 |
T |
|
| Q |
318 |
atggatttttgttgctccacactacaatgtagctaccgattctagtttttcatatgaaatagcgattatacttacatcatggttaggtttacacctggat |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46973255 |
atggatttgtgttgctccacactacaatgtagctaccgattctagtttttcatatgaaatagcgattatacttacatcatggttaggtttacacctggat |
46973354 |
T |
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| Q |
418 |
tcgtactccctatgctactcc |
438 |
Q |
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||||||||||| |||| |||| |
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| T |
46973355 |
tcgtactccctgtgctcctcc |
46973375 |
T |
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