View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_7 (Length: 405)
Name: NF16196_low_7
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 97 - 390
Target Start/End: Complemental strand, 52258645 - 52258354
Alignment:
| Q |
97 |
tatgaaataatgatgaaaattattaatttggtagtgaaaacaaatttgtacaaaatacaagtctcacttatacaccatagtattgatatatatagttaaa |
196 |
Q |
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| T |
52258645 |
tatgaaataatgatgaaatttattaatttggtagtgaaaactaatttgtacaaaatacaaggctcacttatacaccatagtattgatatatatagtt-aa |
52258547 |
T |
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| Q |
197 |
aggaaaatatttagttgcannnnnnnatgtgttccgtttatatttaaaaatagttgaaatcgtttgtataaagcgggttgtaattgaattagatttcttt |
296 |
Q |
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| T |
52258546 |
aggaaaatatttagttgcatttttttatgtgttccgtttatatttaaaaatagttgaaattgttagtataaagcgggttgtagttgaattaggttt-ttt |
52258448 |
T |
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| Q |
297 |
aatgttcgtgtagacgaataaagactaatcaaattaatgacaattggatacgagtgagacgaatctttgtctagttcaaagatatgaagaaggt |
390 |
Q |
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| T |
52258447 |
aatgttcatgtagattgataaagactattcaaattaatgacaaccggatacaaatgagacgaatctttatctaattcaaagatatgaagaaggt |
52258354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 52258692 - 52258646
Alignment:
| Q |
4 |
aatattattatagttaaggttttgta---taaatgatattgcaccag |
47 |
Q |
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| T |
52258692 |
aatattattatagttaaggttttgtatagtaaatgatatttcaccag |
52258646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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