View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16196_low_8 (Length: 375)
Name: NF16196_low_8
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16196_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 53637839 - 53637507
Alignment:
| Q |
26 |
ttgatttaatagttaaaactaaatttctatagtcagatttattcattagacaagcttgatgttattgaaggtgcaagtagtattaaaaaattattgtaac |
125 |
Q |
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| T |
53637839 |
ttgatgtaatagttaaaactaaatttctatagtcagatttattcattagacaagcttgatgttattgaaggtgcaagtagtattaaaaaattattgtaac |
53637740 |
T |
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| Q |
126 |
ataatatatgcggccaggcgctaatgattcacgtggcgatggcggaatttcacagcctgtgtcatatcttcccttgtctttgtaatcttctcttacctct |
225 |
Q |
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| T |
53637739 |
ataatat--gcggccagacgctaatgattcacgtggcgatggcggaatttcacagcctgtgtcatatcttcccttgtctttgtaatcttctcttacctct |
53637642 |
T |
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| Q |
226 |
ttaatcatgtgtatatata--cgatcatttctgcattctagctccaacatccaaaccaattattattctacattgcttctttccttttctatcacctttt |
323 |
Q |
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| T |
53637641 |
ttaatcatgtgtatatatatacgatcatttctgcattctagctccaacatccaaaccaattattattctacattgcttctttccttttctatcacctttt |
53637542 |
T |
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| Q |
324 |
caagctactaagcactcaagaaaaagcctaaatat |
358 |
Q |
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| T |
53637541 |
caagctactaagcactcaagaaaaagcctaaatat |
53637507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 53652289 - 53652206
Alignment:
| Q |
206 |
tgtaatcttctcttacctct---ttaatcatgtgtatatatacgatcatttctgcattctagctccaacatccaaaccaattat |
286 |
Q |
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| T |
53652289 |
tgtaatcttctcttacctgtataataatcatgtgtatatatatcatcgtttgttcattctagctccagcatccaaaccagttat |
53652206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 53652379 - 53652314
Alignment:
| Q |
131 |
atatgcggccaggcgctaatgattcacgtggcgatggcggaatttcacagcctgtgtcatatcttc |
196 |
Q |
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| T |
53652379 |
atatgcggccaaacggtcatgcttcacgtggcgctggcggattttcacagcctgtgtgatatcttc |
53652314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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