View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16196_low_9 (Length: 356)

Name: NF16196_low_9
Description: NF16196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16196_low_9
NF16196_low_9
[»] chr1 (5 HSPs)
chr1 (172-340)||(16815114-16815277)
chr1 (18-80)||(27572223-27572285)
chr1 (17-80)||(20415922-20415985)
chr1 (32-75)||(32908081-32908124)
chr1 (17-81)||(18467487-18467551)
[»] chr3 (2 HSPs)
chr3 (18-82)||(3330527-3330591)
chr3 (18-82)||(6748486-6748550)
[»] chr8 (2 HSPs)
chr8 (18-80)||(34967892-34967954)
chr8 (18-82)||(13151456-13151520)
[»] chr6 (2 HSPs)
chr6 (22-82)||(11715367-11715427)
chr6 (18-80)||(12522507-12522569)
[»] chr4 (2 HSPs)
chr4 (28-75)||(31844602-31844649)
chr4 (17-75)||(41908231-41908289)
[»] scaffold0044 (1 HSPs)
scaffold0044 (18-80)||(22165-22227)
[»] chr7 (1 HSPs)
chr7 (34-80)||(46857793-46857839)
[»] chr2 (3 HSPs)
chr2 (17-75)||(22381907-22381965)
chr2 (17-75)||(22913933-22913991)
chr2 (32-82)||(24003063-24003113)
[»] chr5 (3 HSPs)
chr5 (18-75)||(17361306-17361363)
chr5 (17-73)||(5325478-5325534)
chr5 (18-74)||(31251456-31251512)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 172 - 340
Target Start/End: Original strand, 16815114 - 16815277
Alignment:
Q  172 ttaaacaacagtctcatcctcaattgtgagtctcccacattgagggccagtcttgagattttttgtgtcatctgagaacgaagagaatgatgctcatcag 271  Q
    |||||| |||| ||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16815114 ttaaacgacagcctcatcctcaattttgagtctcccacattcagggttagtcttgagattttttgtgtcatcggagaacgaagagaatgatgctcatcag 16815213  T
Q  272 cattgttttctttttggatttttgttgcaaaatcattattaataatatgttcataatcaatattctttt 340  Q
    |||||||| |||      |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16815214 cattgtttcctt-----ctttttgttgcaaaatcatcattaataatatgttcataatcaatattctttt 16815277  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 27572223 - 27572285
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtacccc 80  Q
    ||||||||| ||| |||||||||||||||| |||||||||||| ||||||||| |||| ||||    
T  27572223 gtatcacctcattgggttgacatacactttgtgtggatttactgggttaggttaatgtccccc 27572285  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 20415985 - 20415922
Alignment:
Q  17 cgtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtacccc 80  Q
    |||||||||| ||| ||||||| |||||||| |||||||||||| ||||| |||||||| ||||    
T  20415985 cgtatcacctgattgggttgacgtacactttgtgtggatttactgggttaagtttatgtccccc 20415922  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 32908081 - 32908124
Alignment:
Q  32 ggttgacatacactttatgtggatttactaggttaggtttatgt 75  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||    
T  32908081 ggttgacatacactttgtgtggattgactgggttaggtttatgt 32908124  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 18467551 - 18467487
Alignment:
Q  17 cgtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtacccca 81  Q
    ||||| |||| |||||||||| || |||||| | ||||||||||  ||||||||||||| |||||    
T  18467551 cgtattacctgattaggttgaaattcactttgtatggatttactgagttaggtttatgtccccca 18467487  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 3330591 - 3330527
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtaccccaa 82  Q
    |||||||||  || |||||||||||||||| |||||||| ||| |||||||||||||| ||||||    
T  3330591 gtatcacctgtttgggttgacatacactttgtgtggattgactgggttaggtttatgtcccccaa 3330527  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6748486 - 6748550
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtaccccaa 82  Q
    ||||||||  ||| ||||||||||||||||  ||| ||| ||| |||||||||||||| ||||||    
T  6748486 gtatcacccgattgggttgacatacactttgagtgaattgactgggttaggtttatgtcccccaa 6748550  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34967892 - 34967954
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtacccc 80  Q
    |||||||  |||| |||||||||||||||| |||||||| |||||||||||| ||||| ||||    
T  34967892 gtatcactctattgggttgacatacactttgtgtggattgactaggttaggtgtatgtccccc 34967954  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 13151520 - 13151456
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtaccccaa 82  Q
    ||||| ||| ||| |||||||||||||||| ||||||||| || ||||| |||||||| ||||||    
T  13151520 gtatcccctgattgggttgacatacactttgtgtggattttctgggttatgtttatgtcccccaa 13151456  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 11715427 - 11715367
Alignment:
Q  22 caccttattaggttgacatacactttatgtggatttactaggttaggtttatgtaccccaa 82  Q
    ||||| ||| ||| ||| ||||||||  |||||||||||||||||||||||||| ||||||    
T  11715427 cacctgattgggtagacttacactttgcgtggatttactaggttaggtttatgtcccccaa 11715367  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 12522507 - 12522569
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtacccc 80  Q
    ||||||||  ||| ||||| |||||||||| |||||||| ||| |||||||||||||| ||||    
T  12522507 gtatcacccgattgggttggcatacactttgtgtggattgactgggttaggtttatgtccccc 12522569  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 31844602 - 31844649
Alignment:
Q  28 attaggttgacatacactttatgtggatttactaggttaggtttatgt 75  Q
    |||||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  31844602 attaggttgacatagactttgtgtagatttactagggtaggtttatgt 31844649  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 41908231 - 41908289
Alignment:
Q  17 cgtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgt 75  Q
    |||||||||| ||| |||  || |||||||| |||||||||||| ||||||||||||||    
T  41908231 cgtatcacctgattgggtaaacctacactttgtgtggatttactgggttaggtttatgt 41908289  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 22165 - 22227
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgtacccc 80  Q
    |||||||||  || |||||||||||||||| |||||||| ||| ||||| |||||||| ||||    
T  22165 gtatcacctgtttgggttgacatacactttgtgtggattgactgggttaagtttatgtccccc 22227  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 46857793 - 46857839
Alignment:
Q  34 ttgacatacactttatgtggatttactaggttaggtttatgtacccc 80  Q
    |||||||||||||| |||||||| ||| |||||||||||||| ||||    
T  46857793 ttgacatacactttgtgtggattgactgggttaggtttatgtccccc 46857839  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 22381907 - 22381965
Alignment:
Q  17 cgtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgt 75  Q
    ||||| |||| ||| |||||||||||||||| |||||||| ||| | ||||||||||||    
T  22381907 cgtattacctgattgggttgacatacactttgtgtggattcactggattaggtttatgt 22381965  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 22913933 - 22913991
Alignment:
Q  17 cgtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgt 75  Q
    ||||| |||| ||| |||||||||||||||| |||||||| ||| | ||||||||||||    
T  22913933 cgtattacctgattgggttgacatacactttgtgtggattcactggattaggtttatgt 22913991  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 24003113 - 24003063
Alignment:
Q  32 ggttgacatacactttatgtggatttactaggttaggtttatgtaccccaa 82  Q
    ||||| |||||||||| |||||||| ||| |||||||||||||| ||||||    
T  24003113 ggttggcatacactttgtgtggattgactgggttaggtttatgtcccccaa 24003063  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 17361306 - 17361363
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatgt 75  Q
    ||||||||  ||| ||||| | ||||||||||||||||| ||| ||||||||||||||    
T  17361306 gtatcacccgattgggttggcctacactttatgtggattgactgggttaggtttatgt 17361363  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5325478 - 5325534
Alignment:
Q  17 cgtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttat 73  Q
    |||||||| | ||| |||||| |||||||||||||  ||| ||||||||||||||||    
T  5325478 cgtatcacttgattgggttgagatacactttatgtacattcactaggttaggtttat 5325534  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 31251512 - 31251456
Alignment:
Q  18 gtatcaccttattaggttgacatacactttatgtggatttactaggttaggtttatg 74  Q
    |||||||||  || |||||||||||||||| |||||||| |||  ||||||||||||    
T  31251512 gtatcacctgtttgggttgacatacactttgtgtggattgactgtgttaggtttatg 31251456  T

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