View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16197_high_6 (Length: 236)
Name: NF16197_high_6
Description: NF16197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16197_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 30567586 - 30567802
Alignment:
| Q |
5 |
tattgtttgtaatttatatacattaacgcaataaaagatagaataaataacttcagagtgtctgtttgaagattagttaggataccgagtttgccattcc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30567586 |
tattgtttgtaatttatatacattaacgcaataaaagatagaataaataacttcggagtgtctgtttgaaggttagttaggataccgagtttgccattcc |
30567685 |
T |
|
| Q |
105 |
aatccttttacgcaaggaaaaactcattaataaaagaacgataataacaattgttctaaattctgtttatgaaatatttatatattcactatcattataa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30567686 |
aatccttttacgcaaggaaaaactcattaataaaagaacgataataacaattgttctaaactctgtttatgaaatatttatatattcactatcattataa |
30567785 |
T |
|
| Q |
205 |
ataaaaagtgaaaatat |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30567786 |
ataaaaagtgaaaatat |
30567802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7123664 - 7123624
Alignment:
| Q |
1 |
aaattattgtttgtaatttatatacattaacgcaataaaag |
41 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
7123664 |
aaattattgttcgtaatttatacacattaacgcaataaaag |
7123624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47410366 - 47410330
Alignment:
| Q |
1 |
aaattattgtttgtaatttatatacattaacgcaata |
37 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
47410366 |
aaattattgttcgtaatttatacacattaacgcaata |
47410330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University